Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52997 * 109.46848 * 66.04509 * 3 2 1 5 5 C 1.50706 * 109.47203 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99617 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99728 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47346 * 60.00632 * 9 7 5 11 11 H 1.48501 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47192 * 299.99814 * 9 7 5 13 13 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 14 14 C 1.50708 * 109.46760 * 293.95026 * 13 2 1 15 15 C 1.34850 * 125.88798 * 94.99918 * 14 13 2 16 16 C 1.40889 * 107.41524 * 180.02562 * 15 14 13 17 17 C 1.34852 * 107.42035 * 359.97438 * 16 15 14 18 18 N 1.36336 * 125.89121 * 274.69026 * 14 13 2 19 19 H 0.96999 * 125.63702 * 0.02562 * 18 14 13 20 20 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 21 21 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 23 23 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 24 24 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 25 25 H 1.08998 * 109.47584 * 300.00097 * 4 3 2 26 26 H 1.09005 * 109.46901 * 60.00396 * 4 3 2 27 27 H 0.97010 * 119.99768 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47196 * 53.94614 * 13 2 1 29 29 H 1.09000 * 109.47010 * 173.95423 * 13 2 1 30 30 H 1.07995 * 126.29207 * 0.02562 * 15 14 13 31 31 H 1.07999 * 126.29521 * 179.97438 * 16 15 14 32 32 H 1.08001 * 125.89622 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1719 3.4642 1.3186 6 1 2.7199 3.8323 0.4638 7 6 1.9660 4.2816 2.4096 8 7 1.2983 3.8335 3.4502 9 14 2.6354 6.0255 2.4096 10 1 2.0440 6.7828 1.2774 11 1 2.2822 6.6913 3.6891 12 1 4.1127 5.9887 2.2627 13 6 1.9955 -0.7659 -1.1376 14 6 1.6370 -2.2204 -0.9729 15 6 0.5646 -2.8361 -1.5108 16 6 0.6078 -4.1858 -1.1091 17 6 1.7053 -4.3437 -0.3415 18 7 2.3442 -3.1420 -0.2592 19 1 3.1645 -2.9704 0.2292 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 0.5471 2.0844 1.4265 26 1 2.0658 1.5015 2.1492 27 1 1.1530 4.4088 4.2177 28 1 1.5611 -0.3872 -2.0628 29 1 3.0798 -0.6610 -1.1756 30 1 -0.1888 -2.3787 -2.1348 31 1 -0.1066 -4.9531 -1.3683 32 1 2.0255 -5.2642 0.1238 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258944062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = 41.269778 kcal Electronic energy + Delta-G solvation = -13204.845633 eV Core-core repulsion = 10972.945256 eV Total energy + Delta-G solvation = -2231.900377 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.91580 -36.97600 -33.10656 -30.74394 -30.67510 -28.70484 -26.52260 -24.89715 -22.41728 -20.38954 -19.97575 -19.85047 -17.21215 -16.44096 -15.05584 -14.70817 -14.52724 -13.76444 -13.50363 -13.47556 -12.95238 -12.54345 -12.17280 -12.08051 -11.93637 -11.25718 -11.09577 -10.97395 -10.82305 -10.56265 -9.85599 -9.41238 -9.14140 -8.67975 -8.32950 -7.96310 -7.66065 -5.99204 -4.01986 2.42498 3.15221 3.33371 3.37863 3.40045 3.52818 4.43221 4.70092 5.15852 5.27892 5.36503 5.44265 5.60048 5.76991 5.86848 5.93375 6.03797 6.29604 6.38405 6.43513 6.48760 6.58457 6.95350 7.15942 7.30036 7.49744 7.56780 7.75678 7.80467 7.89910 8.08496 8.43395 9.05177 9.61633 11.12133 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.076331 B = 0.005538 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.733517 B = 5054.839691 C = 5075.225043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.115 3.885 14 C 0.041 3.959 15 C -0.203 4.203 16 C -0.204 4.204 17 C -0.022 4.022 18 N -0.547 5.547 19 H 0.414 0.586 20 H 0.018 0.982 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.018 0.982 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -12.765 -8.162 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.065 4.065 4 C -0.009 4.009 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.013 4.013 14 C -0.073 4.073 15 C -0.228 4.228 16 C -0.229 4.229 17 C -0.153 4.153 18 N -0.141 5.141 19 H 0.250 0.750 20 H 0.036 0.964 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.943 -12.901 -7.477 14.941 hybrid contribution 0.366 1.385 -0.393 1.486 sum 1.310 -11.515 -7.870 14.009 Atomic orbital electron populations 1.22405 0.87604 1.01300 1.00978 1.62132 1.08244 1.15746 1.40354 1.22379 0.98403 0.85056 1.00617 1.19087 0.97024 0.93963 0.90820 1.21158 1.35268 0.97835 1.01957 0.92850 1.24987 0.95274 0.98452 0.95548 1.69966 1.40706 1.36510 1.06066 0.86655 0.79414 0.84680 0.77211 1.20273 1.21263 1.20253 1.20567 1.00078 0.87231 0.93466 1.20295 0.95530 0.91562 0.99899 1.20652 0.99950 0.94601 1.07582 1.20820 1.00055 0.97024 1.04971 1.21748 0.97271 0.89560 1.06767 1.41951 1.22864 1.08356 1.40972 0.74994 0.96363 0.91804 0.90593 0.92246 0.96030 0.96361 0.95855 0.92932 0.93133 0.90649 0.85283 0.85197 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.12 60.06 0.55 1.00 16 2 N -0.54 -10.03 4.75 -244.37 -1.16 -11.19 16 3 C 0.06 1.32 4.90 -3.82 -0.02 1.30 16 4 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 5 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.12 1.75 5.50 -4.97 -0.03 1.73 16 14 C 0.04 0.60 5.92 -81.79 -0.48 0.11 16 15 C -0.20 -2.86 9.62 -39.78 -0.38 -3.24 16 16 C -0.20 -2.61 10.86 -39.78 -0.43 -3.04 16 17 C -0.02 -0.26 11.94 -16.75 -0.20 -0.46 16 18 N -0.55 -6.96 6.07 -9.12 -0.06 -7.01 16 19 H 0.41 4.44 8.96 -40.82 -0.37 4.08 16 20 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 21 H 0.06 1.06 6.32 -51.93 -0.33 0.73 16 22 H 0.08 1.50 6.47 -51.93 -0.34 1.16 16 23 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 24 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.02 0.50 6.55 -51.93 -0.34 0.16 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 29 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 30 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 269.21 15.07 4.06 4.06 Total: -1.00 -31.19 269.21 -7.68 -38.87 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.69 Total: 0.55 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.54 Total: -15.61 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.48 Total: -44.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.19 -7.68 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258944062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.138 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds