Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52997 * 109.46848 * 66.04509 * 3 2 1 5 5 C 1.50706 * 109.47203 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99617 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00090 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00061 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99728 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47346 * 60.00632 * 9 7 5 11 11 H 1.48501 * 109.47072 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47192 * 299.99814 * 9 7 5 13 13 C 1.46902 * 111.00283 * 236.05039 * 2 1 3 14 14 C 1.50708 * 109.46760 * 293.95026 * 13 2 1 15 15 C 1.34850 * 125.88798 * 94.99918 * 14 13 2 16 16 C 1.40889 * 107.41524 * 180.02562 * 15 14 13 17 17 C 1.34852 * 107.42035 * 359.97438 * 16 15 14 18 18 N 1.36336 * 125.89121 * 274.69026 * 14 13 2 19 19 H 0.96999 * 125.63702 * 0.02562 * 18 14 13 20 20 H 1.08997 * 109.47334 * 60.00212 * 1 2 3 21 21 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47296 * 299.99911 * 1 2 3 23 23 H 1.08998 * 109.47121 * 186.04343 * 3 2 1 24 24 H 1.09000 * 109.47141 * 306.04541 * 3 2 1 25 25 H 1.08998 * 109.47584 * 300.00097 * 4 3 2 26 26 H 1.09005 * 109.46901 * 60.00396 * 4 3 2 27 27 H 0.97010 * 119.99768 * 180.02562 * 8 7 5 28 28 H 1.08993 * 109.47196 * 53.94614 * 13 2 1 29 29 H 1.09000 * 109.47010 * 173.95423 * 13 2 1 30 30 H 1.07995 * 126.29207 * 0.02562 * 15 14 13 31 31 H 1.07999 * 126.29521 * 179.97438 * 16 15 14 32 32 H 1.08001 * 125.89622 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3182 5 6 2.1719 3.4642 1.3186 6 1 2.7199 3.8323 0.4638 7 6 1.9660 4.2816 2.4096 8 7 1.2983 3.8335 3.4502 9 14 2.6354 6.0255 2.4096 10 1 2.0440 6.7828 1.2774 11 1 2.2822 6.6913 3.6891 12 1 4.1127 5.9887 2.2627 13 6 1.9955 -0.7659 -1.1376 14 6 1.6370 -2.2204 -0.9729 15 6 0.5646 -2.8361 -1.5108 16 6 0.6078 -4.1858 -1.1091 17 6 1.7053 -4.3437 -0.3415 18 7 2.3442 -3.1420 -0.2592 19 1 3.1645 -2.9704 0.2292 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 0.5471 2.0844 1.4265 26 1 2.0658 1.5015 2.1492 27 1 1.1530 4.4088 4.2177 28 1 1.5611 -0.3872 -2.0628 29 1 3.0798 -0.6610 -1.1756 30 1 -0.1888 -2.3787 -2.1348 31 1 -0.1066 -4.9531 -1.3683 32 1 2.0255 -5.2642 0.1238 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258944062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = 20.499897 kcal Electronic energy + Delta-G solvation = -13205.746283 eV Core-core repulsion = 10972.945256 eV Total energy + Delta-G solvation = -2232.801026 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.91663 -38.49267 -35.19932 -32.34049 -31.72981 -30.23293 -27.94498 -26.64423 -24.09263 -21.68047 -21.31471 -20.98138 -18.62338 -18.20601 -16.57833 -16.49053 -16.19709 -15.14735 -14.74732 -14.62266 -14.28388 -14.07810 -13.88470 -13.34695 -13.14959 -13.06914 -12.80424 -12.56541 -12.46775 -12.19757 -11.80696 -11.36412 -11.26755 -10.53601 -9.67684 -9.27700 -8.85118 -8.19493 -6.31314 1.38977 1.41444 1.44092 1.52063 2.14350 2.41258 2.58936 3.13948 3.25889 4.02347 4.22850 4.33871 4.46546 4.50522 4.58693 4.66025 4.74821 4.77499 4.91874 5.02705 5.11070 5.40651 5.45736 5.46090 5.65274 5.78203 6.05873 6.14119 6.26649 6.28916 6.35215 6.85376 6.86242 7.38052 8.92500 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.076331 B = 0.005538 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.733517 B = 5054.839691 C = 5075.225043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.551 5.551 3 C 0.078 3.922 4 C 0.036 3.964 5 C -0.545 4.545 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.120 3.880 14 C 0.017 3.983 15 C -0.212 4.212 16 C -0.224 4.224 17 C -0.012 4.012 18 N -0.548 5.548 19 H 0.421 0.579 20 H 0.027 0.973 21 H 0.077 0.923 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.024 0.976 25 H -0.007 1.007 26 H -0.010 1.010 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -13.108 -9.089 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.276 5.276 3 C -0.049 4.049 4 C -0.002 4.002 5 C -0.584 4.584 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.190 1.190 13 C -0.008 4.008 14 C -0.097 4.097 15 C -0.238 4.238 16 C -0.248 4.248 17 C -0.144 4.144 18 N -0.143 5.143 19 H 0.259 0.741 20 H 0.046 0.954 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.150 0.850 31 H 0.165 0.835 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.764 -13.256 -8.422 15.804 hybrid contribution 0.085 1.381 -0.099 1.388 sum 1.849 -11.874 -8.521 14.732 Atomic orbital electron populations 1.22294 0.87444 1.01795 0.99986 1.62022 1.08521 1.14292 1.42737 1.22020 0.98914 0.86377 0.97564 1.18922 0.95016 0.93718 0.92512 1.21611 1.35420 0.98930 1.02418 0.91978 1.25971 0.95378 1.03303 0.95007 1.70113 1.41992 1.38367 1.06847 0.85476 0.79123 0.78770 0.77513 1.19130 1.20904 1.19041 1.20547 1.00553 0.87396 0.92276 1.20183 0.96548 0.91372 1.01578 1.20888 0.99870 0.95496 1.07537 1.21145 1.01127 0.96959 1.05600 1.22346 0.96400 0.90158 1.05462 1.42049 1.23130 1.08442 1.40683 0.74086 0.95449 0.90474 0.93409 0.91401 0.95770 0.98860 0.99142 0.92776 0.92305 0.89641 0.84994 0.83510 0.79014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 9.12 127.69 1.16 2.35 16 2 N -0.55 -20.29 4.75 -927.05 -4.41 -24.69 16 3 C 0.08 3.33 4.90 86.30 0.42 3.75 16 4 C 0.04 1.94 4.90 29.85 0.15 2.08 16 5 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 6 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -57.61 13.29 21.44 0.28 -57.32 16 9 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.12 3.50 5.50 85.56 0.47 3.97 16 14 C 0.02 0.47 5.92 41.08 0.24 0.71 16 15 C -0.21 -5.67 9.62 22.14 0.21 -5.46 16 16 C -0.22 -5.26 10.86 22.14 0.24 -5.02 16 17 C -0.01 -0.25 11.94 83.21 0.99 0.75 16 18 N -0.55 -12.87 6.07 -182.76 -1.11 -13.98 16 19 H 0.42 8.30 8.96 -92.71 -0.83 7.47 16 20 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.08 2.53 6.32 -2.39 -0.02 2.52 16 22 H 0.05 1.96 6.47 -2.39 -0.02 1.94 16 23 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 24 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 25 H -0.01 -0.40 6.55 -2.39 -0.02 -0.42 16 26 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 27 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 28 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 29 H 0.09 2.29 7.93 -2.39 -0.02 2.27 16 30 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -66.74 269.21 1.65 -65.10 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.26 Total: 11.96 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 4.59 Total: -27.38 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -5.23 Total: -96.00 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.74 1.65 -65.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258944062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.596 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds