Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99900 * 2 1 4 4 C 1.50703 * 109.47305 * 293.96114 * 3 2 1 5 5 H 1.08002 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00080 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99859 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99881 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47315 * 90.00003 * 8 6 4 10 10 H 1.48494 * 109.47188 * 209.99856 * 8 6 4 11 11 H 1.48499 * 109.47230 * 330.00159 * 8 6 4 12 12 C 1.46896 * 111.00150 * 123.95651 * 2 1 3 13 13 C 1.53001 * 109.47060 * 66.04598 * 12 2 1 14 14 C 1.50704 * 109.47000 * 179.97438 * 13 12 2 15 15 C 1.34845 * 125.88833 * 84.99859 * 14 13 12 16 16 C 1.40883 * 107.41891 * 180.02562 * 15 14 13 17 17 C 1.34854 * 107.41814 * 0.02562 * 16 15 14 18 18 N 1.36343 * 108.21624 * 0.26031 * 17 16 15 19 19 H 0.96994 * 125.63652 * 179.73195 * 18 17 16 20 20 H 1.09003 * 109.46576 * 296.04105 * 1 2 3 21 21 H 1.08998 * 109.47483 * 56.04112 * 1 2 3 22 22 H 1.08994 * 109.46643 * 176.04685 * 1 2 3 23 23 H 1.09003 * 109.47047 * 53.95586 * 3 2 1 24 24 H 1.09000 * 109.47428 * 173.95414 * 3 2 1 25 25 H 0.97003 * 119.99828 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47361 * 306.04528 * 12 2 1 27 27 H 1.09002 * 109.46644 * 186.04334 * 12 2 1 28 28 H 1.09007 * 109.46845 * 59.99696 * 13 12 2 29 29 H 1.08998 * 109.47171 * 299.99918 * 13 12 2 30 30 H 1.08010 * 126.29149 * 0.02562 * 15 14 13 31 31 H 1.08008 * 126.29481 * 179.97438 * 16 15 14 32 32 H 1.08002 * 125.89007 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0744 1.5114 -2.0487 6 6 2.0266 3.3496 -1.5284 7 7 1.7140 3.9392 -2.6616 8 14 2.9987 4.2767 -0.2303 9 1 4.4513 4.0644 -0.4541 10 1 2.6904 5.7264 -0.3224 11 1 2.6273 3.7762 1.1176 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 6 2.1722 -3.0286 2.1369 15 6 1.5636 -3.1936 3.3288 16 6 2.4078 -3.9910 4.1265 17 6 3.5004 -4.2825 3.3919 18 7 3.3643 -3.6893 2.1718 19 1 4.0079 -3.7327 1.4474 20 1 -0.3632 0.4512 0.9234 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3632 -1.0252 -0.0708 23 1 1.5611 1.9273 0.8310 24 1 3.0797 1.3445 0.1082 25 1 1.9886 4.8553 -2.8236 26 1 1.5612 -0.3873 2.0627 27 1 3.0798 -0.6611 1.1754 28 1 2.0659 -2.6213 0.0449 29 1 0.5473 -2.3475 0.9322 30 1 0.6051 -2.7888 3.6187 31 1 2.2156 -4.3096 5.1405 32 1 4.3406 -4.8787 3.7159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258992388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = 23.472608 kcal Electronic energy + Delta-G solvation = -13181.893143 eV Core-core repulsion = 10949.221023 eV Total energy + Delta-G solvation = -2232.672120 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.91670 -38.56662 -34.87485 -33.16765 -31.74626 -29.91341 -28.35166 -26.57668 -23.70961 -21.76363 -21.40930 -20.91136 -18.98784 -18.31748 -16.58202 -16.25215 -16.16290 -15.25285 -14.87002 -14.60975 -14.38462 -14.33451 -13.88363 -13.39689 -13.16655 -13.00571 -12.77784 -12.59845 -12.32976 -12.22865 -11.87913 -11.64899 -11.46072 -10.79334 -9.71465 -9.07163 -8.86501 -8.29374 -6.32737 1.33509 1.34904 1.40078 1.45712 2.14159 2.33228 2.54684 3.03589 3.26492 4.03333 4.19848 4.31595 4.47175 4.51230 4.59774 4.65362 4.70123 4.76040 4.90662 4.98995 5.01073 5.09644 5.26768 5.40549 5.48227 5.51919 5.96902 6.15205 6.26929 6.34936 6.62826 6.73521 6.84361 7.30978 8.87130 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.053345 B = 0.006224 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.755150 B = 4497.553193 C = 4736.205331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.548 5.548 3 C 0.170 3.830 4 C -0.517 4.517 5 H 0.041 0.959 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.945 3.055 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.255 1.255 12 C 0.064 3.936 13 C -0.036 4.036 14 C 0.011 3.989 15 C -0.219 4.219 16 C -0.225 4.225 17 C -0.012 4.012 18 N -0.554 5.554 19 H 0.423 0.577 20 H 0.018 0.982 21 H 0.049 0.951 22 H 0.084 0.916 23 H -0.014 1.014 24 H 0.026 0.974 25 H 0.267 0.733 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -14.939 12.729 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.272 5.272 3 C 0.043 3.957 4 C -0.556 4.556 5 H 0.059 0.941 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.769 3.231 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.179 1.179 12 C -0.064 4.064 13 C -0.074 4.074 14 C -0.103 4.103 15 C -0.244 4.244 16 C -0.250 4.250 17 C -0.144 4.144 18 N -0.150 5.150 19 H 0.262 0.738 20 H 0.037 0.963 21 H 0.068 0.932 22 H 0.102 0.898 23 H 0.003 0.997 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.592 -15.014 12.085 19.605 hybrid contribution 0.219 1.212 0.512 1.333 sum 3.811 -13.802 12.597 19.071 Atomic orbital electron populations 1.22266 0.87368 1.01690 0.99777 1.61857 1.08507 1.14642 1.42156 1.19954 0.95021 0.85992 0.94758 1.21269 1.35000 0.97552 1.01739 0.94098 1.25818 0.96979 0.98389 0.97610 1.70040 1.48551 1.13948 1.26203 0.85742 0.79513 0.77788 0.80073 1.18902 1.20544 1.17871 1.22078 0.99526 0.93638 0.91176 1.19980 1.01563 0.91545 0.94324 1.20344 0.89111 1.02670 0.98174 1.20933 1.02239 1.06821 0.94419 1.21176 0.96549 1.06045 1.01211 1.22342 1.02278 1.04142 0.85611 1.42106 1.17029 1.41071 1.14795 0.73845 0.96335 0.93238 0.89770 0.99655 0.95554 0.92368 0.95483 0.91922 0.90393 0.89345 0.85066 0.83655 0.78859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 9.14 127.69 1.17 2.58 16 2 N -0.55 -22.75 4.75 -927.05 -4.41 -27.16 16 3 C 0.17 8.32 3.79 85.56 0.32 8.64 16 4 C -0.52 -30.25 9.01 25.60 0.23 -30.02 16 5 H 0.04 2.65 7.37 -2.91 -0.02 2.63 16 6 C 0.01 0.56 5.47 84.66 0.46 1.02 16 7 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 9 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 12 C 0.06 2.13 4.94 86.30 0.43 2.56 16 13 C -0.04 -0.95 5.68 29.85 0.17 -0.78 16 14 C 0.01 0.27 6.42 41.08 0.26 0.53 16 15 C -0.22 -5.61 10.76 22.14 0.24 -5.38 16 16 C -0.23 -4.98 10.86 22.14 0.24 -4.74 16 17 C -0.01 -0.23 11.94 83.21 0.99 0.76 16 18 N -0.55 -11.32 6.08 -182.76 -1.11 -12.43 16 19 H 0.42 6.59 8.96 -92.71 -0.83 5.76 16 20 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 21 H 0.05 2.17 6.76 -2.39 -0.02 2.15 16 22 H 0.08 2.60 6.47 -2.39 -0.02 2.58 16 23 H -0.01 -0.70 7.18 -2.39 -0.02 -0.72 16 24 H 0.03 1.27 7.36 -2.39 -0.02 1.25 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 27 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 29 H 0.09 2.26 6.55 -2.39 -0.02 2.25 16 30 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.32 266.49 1.40 -66.92 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.21 Total: 10.31 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.52 Total: -24.84 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -5.22 Total: -98.72 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -68.32 1.40 -66.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258992388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.395 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds