Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99770 * 2 1 4 4 C 1.46902 * 110.99870 * 123.95465 * 2 1 3 5 5 H 1.09004 * 109.46804 * 201.20060 * 4 2 1 6 6 C 1.52998 * 109.46987 * 321.20170 * 4 2 1 7 7 C 1.50710 * 109.47016 * 289.92056 * 6 4 2 8 8 H 1.07994 * 119.99792 * 353.91962 * 7 6 4 9 9 C 1.37876 * 119.99862 * 173.65219 * 7 6 4 10 10 N 1.31516 * 120.00086 * 0.27237 * 9 7 6 11 11 Si 1.86795 * 119.99886 * 180.27588 * 9 7 6 12 12 H 1.48495 * 109.47447 * 59.99726 * 11 9 7 13 13 H 1.48503 * 109.47127 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46959 * 299.99373 * 11 9 7 15 15 C 1.50698 * 109.47150 * 81.20122 * 4 2 1 16 16 C 1.40884 * 126.29070 * 131.68508 * 15 4 2 17 17 C 1.34855 * 107.41691 * 179.97438 * 16 15 4 18 18 N 1.36338 * 108.21881 * 0.02562 * 17 16 15 19 19 H 0.97004 * 125.63948 * 180.02562 * 18 17 16 20 20 C 1.34850 * 126.28928 * 311.37243 * 15 4 2 21 21 H 1.08992 * 109.47356 * 303.06907 * 1 2 3 22 22 H 1.08998 * 109.47151 * 63.07661 * 1 2 3 23 23 H 1.09006 * 109.46871 * 183.06815 * 1 2 3 24 24 H 1.08998 * 109.47199 * 174.15693 * 3 2 1 25 25 H 1.09001 * 109.47443 * 294.16548 * 3 2 1 26 26 H 1.09010 * 109.47151 * 54.16493 * 3 2 1 27 27 H 1.09000 * 109.47003 * 169.92473 * 6 4 2 28 28 H 1.09001 * 109.47763 * 49.92031 * 6 4 2 29 29 H 0.97000 * 120.00052 * 180.02562 * 10 9 7 30 30 H 1.07995 * 126.29729 * 359.97438 * 16 15 4 31 31 H 1.08003 * 125.89075 * 179.97438 * 17 16 15 32 32 H 1.08005 * 125.89427 * 0.02562 * 20 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0202 -0.4554 1.3417 6 6 1.1287 -0.5072 2.3715 7 6 1.3445 0.9056 2.8497 8 1 2.1016 1.5221 2.3882 9 6 0.5717 1.4128 3.8727 10 7 -0.3502 0.6619 4.4348 11 14 0.8341 3.1664 4.4602 12 1 0.6003 4.1059 3.3343 13 1 -0.1166 3.4672 5.5608 14 1 2.2267 3.3204 4.9525 15 6 1.9726 -2.2361 0.8070 16 6 3.0334 -3.1466 0.9813 17 6 2.6014 -4.3542 0.5647 18 7 1.3130 -4.2225 0.1389 19 1 0.7581 -4.9362 -0.2127 20 6 0.9310 -2.9230 0.2954 21 1 -0.3633 0.5607 0.8611 22 1 -0.3633 0.4653 -0.9163 23 1 -0.3633 -1.0263 0.0550 24 1 3.0800 1.3443 0.1046 25 1 1.7329 1.8614 -0.9376 26 1 1.5639 1.9263 0.8332 27 1 1.4049 -1.2047 3.1623 28 1 0.0788 -0.6472 2.1140 29 1 -0.8942 1.0189 5.1542 30 1 4.0126 -2.9194 1.3761 31 1 3.1772 -5.2680 0.5670 32 1 -0.0377 -2.5138 0.0491 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259394754.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = 38.592643 kcal Electronic energy + Delta-G solvation = -13966.082035 eV Core-core repulsion = 11734.065569 eV Total energy + Delta-G solvation = -2232.016466 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.84363 -38.85092 -34.74811 -32.61838 -30.63465 -29.63745 -28.25858 -27.03219 -24.21873 -22.17611 -21.24992 -19.89857 -18.89319 -18.16662 -16.62085 -16.36873 -15.49957 -15.32782 -14.74940 -14.44408 -14.27347 -14.07635 -13.43134 -13.25520 -13.06730 -12.84992 -12.53922 -12.36755 -12.23474 -12.06250 -11.84135 -11.56772 -11.00405 -10.53150 -9.43376 -8.91982 -8.72930 -8.15003 -6.23481 1.38391 1.40266 1.47538 1.58160 2.22050 2.41819 2.70641 3.15980 3.52730 4.29522 4.35163 4.52913 4.60876 4.65986 4.85931 4.87141 4.94215 5.05005 5.11635 5.24629 5.34416 5.37355 5.54312 5.57221 5.72283 5.85543 6.20799 6.28279 6.30427 6.42434 6.53680 6.90468 7.02977 7.42585 8.95426 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.040506 B = 0.009504 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.087089 B = 2945.275898 C = 3189.134964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.526 5.526 3 C 0.018 3.982 4 C 0.160 3.840 5 H 0.052 0.948 6 C 0.015 3.985 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.270 1.270 15 C -0.162 4.162 16 C -0.233 4.233 17 C -0.005 4.005 18 N -0.552 5.552 19 H 0.428 0.572 20 C -0.023 4.023 21 H 0.017 0.983 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.034 0.966 27 H -0.026 1.026 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.129 0.871 31 H 0.199 0.801 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -6.664 -9.469 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.248 5.248 3 C -0.130 4.130 4 C 0.051 3.949 5 H 0.070 0.930 6 C -0.023 4.023 7 C -0.565 4.565 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.572 5.572 11 Si 0.778 3.222 12 H -0.191 1.191 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.169 4.169 16 C -0.258 4.258 17 C -0.136 4.136 18 N -0.148 5.148 19 H 0.267 0.733 20 C -0.154 4.154 21 H 0.035 0.965 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.053 0.947 27 H -0.008 1.008 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.216 0.784 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.704 -7.001 -9.844 12.379 hybrid contribution -0.547 1.082 1.457 1.895 sum 2.158 -5.919 -8.387 10.490 Atomic orbital electron populations 1.22476 0.88523 1.01412 0.99933 1.62474 1.07729 1.13399 1.41241 1.22580 0.99635 0.89847 1.00976 1.19918 0.97080 0.88937 0.88961 0.92966 1.19593 0.95432 0.94757 0.92548 1.21707 1.18358 0.99045 1.17401 0.91520 1.25849 0.95102 1.01638 0.96773 1.70102 1.23027 1.38204 1.25834 0.85691 0.78070 0.80370 0.78106 1.19084 1.21161 1.19525 1.19635 0.95608 0.95064 1.06637 1.21005 0.99988 0.93909 1.10911 1.22195 0.86256 0.99948 1.05241 1.41907 1.12574 1.09165 1.51187 0.73277 1.21856 1.00297 0.84369 1.08889 0.96462 0.91018 0.91486 0.92367 0.90987 0.94732 1.00753 0.96796 0.93104 0.85282 0.78394 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.97 8.08 127.69 1.03 2.00 16 2 N -0.53 -21.44 4.82 -927.71 -4.47 -25.91 16 3 C 0.02 0.69 8.68 127.69 1.11 1.80 16 4 C 0.16 7.22 2.37 44.17 0.10 7.32 16 5 H 0.05 2.45 7.60 -2.39 -0.02 2.44 16 6 C 0.01 0.80 3.93 29.85 0.12 0.92 16 7 C -0.53 -29.68 7.00 25.60 0.18 -29.50 16 8 H 0.07 3.61 5.62 -2.91 -0.02 3.59 16 9 C 0.00 0.23 5.46 84.65 0.46 0.69 16 10 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 11 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 15 C -0.16 -6.50 5.05 -20.00 -0.10 -6.60 16 16 C -0.23 -8.15 10.81 22.14 0.24 -7.91 16 17 C 0.00 -0.13 11.94 83.22 0.99 0.86 16 18 N -0.55 -14.28 6.07 -194.55 -1.18 -15.46 16 19 H 0.43 7.36 8.96 -92.71 -0.83 6.53 16 20 C -0.02 -0.80 11.03 83.21 0.92 0.12 16 21 H 0.02 0.80 6.13 -2.39 -0.01 0.78 16 22 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.07 2.48 4.46 -2.38 -0.01 2.47 16 24 H 0.06 2.13 7.80 -2.39 -0.02 2.11 16 25 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.03 1.51 5.27 -2.38 -0.01 1.50 16 27 H -0.03 -1.58 8.11 -2.39 -0.02 -1.60 16 28 H 0.01 0.79 5.79 -2.39 -0.01 0.77 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.20 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.17 5.38 5.38 -2.91 -0.02 5.37 16 Total: -1.00 -68.31 255.23 2.00 -66.30 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.29 Total: 15.41 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 5.05 Total: -30.29 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -5.37 Total: -98.07 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.31 2.00 -66.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259394754.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.896 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds