Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47487 * 2 1 4 4 N 1.46498 * 109.47386 * 179.97438 * 3 2 1 5 5 C 1.35072 * 126.48580 * 264.69100 * 4 3 2 6 6 N 1.31018 * 109.64634 * 179.88359 * 5 4 3 7 7 C 1.33015 * 109.98083 * 0.38531 * 6 5 4 8 8 C 1.50702 * 126.27156 * 179.76646 * 7 6 5 9 9 C 1.53000 * 109.46943 * 275.40376 * 8 7 6 10 10 C 1.38436 * 126.48451 * 84.99659 * 4 3 2 11 11 C 1.40063 * 127.05783 * 359.93487 * 10 4 3 12 12 H 1.08001 * 119.99894 * 222.57400 * 11 10 4 13 13 C 1.40072 * 120.00392 * 42.58076 * 11 10 4 14 14 N 1.30854 * 119.99774 * 23.73146 * 13 11 10 15 15 Si 1.86799 * 120.00177 * 203.73621 * 13 11 10 16 16 H 1.48503 * 109.47094 * 89.99280 * 15 13 11 17 17 H 1.48491 * 109.47368 * 209.99893 * 15 13 11 18 18 H 1.48504 * 109.47064 * 329.99788 * 15 13 11 19 19 H 1.08996 * 109.47556 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46992 * 300.00328 * 1 2 3 21 21 H 1.09000 * 109.46659 * 59.99744 * 1 2 3 22 22 H 1.09006 * 109.47373 * 240.00045 * 2 1 3 23 23 H 1.08997 * 109.47119 * 120.00027 * 2 1 3 24 24 H 1.09004 * 109.47273 * 59.99844 * 3 2 1 25 25 H 1.08997 * 109.46963 * 300.00122 * 3 2 1 26 26 H 1.07994 * 125.17746 * 359.97438 * 5 4 3 27 27 H 1.08997 * 109.46715 * 35.40110 * 8 7 6 28 28 H 1.08997 * 109.47020 * 155.40161 * 8 7 6 29 29 H 1.09002 * 109.47028 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47367 * 299.99967 * 9 8 7 31 31 H 1.09004 * 109.46994 * 59.99547 * 9 8 7 32 32 H 0.97001 * 119.99842 * 174.28835 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.3078 1.5431 1.0823 6 7 5.5619 1.5054 0.7051 7 6 5.6354 1.3889 -0.6179 8 6 6.8978 1.3173 -1.4379 9 6 7.3985 2.7337 -1.7279 10 6 4.3287 1.3452 -1.1078 11 6 3.9324 1.2266 -2.4460 12 1 4.4408 0.5339 -3.1003 13 6 2.8769 2.0063 -2.9357 14 7 2.5671 3.1326 -2.3459 15 14 1.9114 1.4385 -4.4306 16 1 0.7636 0.6050 -3.9913 17 1 1.4084 2.6216 -5.1737 18 1 2.7949 0.6372 -5.3154 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6768 1.9564 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 3.9676 1.6385 2.1028 27 1 7.6598 0.7688 -0.8844 28 1 6.6920 0.8051 -2.3777 29 1 8.3119 2.6818 -2.3206 30 1 6.6365 3.2823 -2.2814 31 1 7.6043 3.2459 -0.7880 32 1 1.8924 3.7127 -2.7321 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259572370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = 25.707476 kcal Electronic energy + Delta-G solvation = -14048.860035 eV Core-core repulsion = 11816.284826 eV Total energy + Delta-G solvation = -2232.575209 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02908 -34.85880 -33.45847 -32.42095 -30.36127 -28.49944 -25.32106 -24.68872 -22.17811 -21.18849 -19.67439 -18.30952 -16.85969 -15.32813 -14.87381 -14.42522 -13.78742 -13.58053 -13.10070 -12.82582 -12.29899 -12.14798 -11.79066 -11.62829 -11.46763 -11.23576 -10.98863 -10.76953 -10.55231 -10.40667 -10.22641 -10.13512 -9.89770 -9.02543 -8.34044 -7.83463 -6.83478 -6.55048 -4.29827 2.93534 3.08394 3.12064 3.72496 3.98033 4.36415 4.56993 5.04788 5.44334 5.51074 5.71746 5.90269 5.99768 6.18896 6.24022 6.26264 6.30645 6.41261 6.59531 6.66746 6.78486 6.84594 6.88565 7.04683 7.26307 7.31041 7.49977 7.91808 7.96216 8.51103 8.72228 8.88013 9.17717 9.85380 10.27374 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.023411 B = 0.015847 C = 0.010576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.712506 B = 1766.520372 C = 2646.830219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.112 3.888 4 N -0.459 5.459 5 C 0.070 3.930 6 N -0.484 5.484 7 C -0.130 4.130 8 C -0.002 4.002 9 C -0.136 4.136 10 C 0.218 3.782 11 C -0.471 4.471 12 H 0.089 0.911 13 C 0.082 3.918 14 N -0.816 5.816 15 Si 0.893 3.107 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.262 1.262 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.110 0.890 26 H 0.166 0.834 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -2.691 0.305 4.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.012 4.012 4 N -0.146 5.146 5 C -0.206 4.206 6 N -0.202 5.202 7 C -0.259 4.259 8 C -0.041 4.041 9 C -0.193 4.193 10 C 0.103 3.897 11 C -0.507 4.507 12 H 0.107 0.893 13 C -0.132 4.132 14 N -0.446 5.446 15 Si 0.718 3.282 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.186 1.186 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.183 0.817 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.547 -2.484 0.945 4.432 hybrid contribution -1.434 -0.055 -1.067 1.788 sum -4.981 -2.539 -0.122 5.592 Atomic orbital electron populations 1.21676 0.95917 1.01198 1.01530 1.21845 0.95176 0.97933 1.02523 1.21822 0.79095 0.96181 1.04106 1.45394 1.05428 1.56625 1.07148 1.23687 0.86320 1.18259 0.92301 1.69230 1.18882 1.18040 1.14047 1.20678 0.93046 1.22326 0.89833 1.19214 0.92386 0.95655 0.96805 1.21670 0.99109 0.98320 1.00242 1.18477 0.87651 0.96157 0.87407 1.18300 1.15759 1.23399 0.93231 0.89316 1.25711 0.96028 0.93714 0.97750 1.69799 1.28366 1.07659 1.38789 0.86538 0.80523 0.79329 0.81771 1.19419 1.20555 1.18584 0.92923 0.93053 0.92757 0.91049 0.92558 0.92411 0.87274 0.81705 0.93839 0.92351 0.94624 0.92652 0.93777 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.48 6.26 -26.73 -0.17 -2.64 16 3 C 0.11 2.35 5.68 -4.04 -0.02 2.33 16 4 N -0.46 -11.27 2.77 -115.63 -0.32 -11.59 16 5 C 0.07 1.69 12.51 -89.92 -1.13 0.57 16 6 N -0.48 -12.71 11.18 -9.84 -0.11 -12.82 16 7 C -0.13 -3.41 6.50 -81.56 -0.53 -3.94 16 8 C 0.00 -0.05 6.35 -27.88 -0.18 -0.22 16 9 C -0.14 -2.83 9.89 37.16 0.37 -2.46 16 10 C 0.22 5.81 6.07 -83.68 -0.51 5.30 16 11 C -0.47 -12.26 8.70 -38.21 -0.33 -12.59 16 12 H 0.09 2.27 7.88 -52.49 -0.41 1.86 16 13 C 0.08 2.01 4.20 -17.28 -0.07 1.94 16 14 N -0.82 -20.69 11.22 55.56 0.62 -20.07 16 15 Si 0.89 18.39 29.63 -169.99 -5.04 13.36 16 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 25 H 0.11 2.49 4.71 -51.93 -0.24 2.25 16 26 H 0.17 3.40 8.06 -52.49 -0.42 2.98 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.28 7.81 -51.93 -0.41 0.87 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 270.38 15.07 4.07 4.07 Total: -1.00 -28.72 270.38 -7.82 -36.53 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.85 Total: 4.00 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.20 Total: -13.48 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.19 Total: -44.48 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.72 -7.82 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259572370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.241 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds