Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86805 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47417 * 274.98852 * 3 2 1 5 5 H 1.48495 * 109.46768 * 34.99108 * 3 2 1 6 6 H 1.48508 * 109.46874 * 154.98796 * 3 2 1 7 7 C 1.40069 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 186.56510 * 7 2 1 9 9 C 1.39909 * 120.00079 * 6.55647 * 7 2 1 10 10 S 1.75578 * 125.12851 * 353.33073 * 9 7 2 11 11 C 1.75445 * 91.11218 * 179.97438 * 10 9 7 12 12 C 1.35083 * 110.86221 * 359.97438 * 11 10 9 13 13 C 1.38572 * 125.12660 * 173.32790 * 9 7 2 14 14 C 1.52312 * 123.72190 * 0.14659 * 13 9 7 15 15 C 1.53163 * 108.08504 * 163.74803 * 14 13 9 16 16 N 1.46931 * 109.29701 * 50.30514 * 15 14 13 17 17 C 1.46765 * 111.30454 * 286.71101 * 16 15 14 18 18 H 0.97003 * 119.99954 * 359.97438 * 1 2 3 19 19 H 1.07998 * 124.56982 * 180.02562 * 11 10 9 20 20 H 1.09007 * 109.73669 * 283.39692 * 14 13 9 21 21 H 1.08998 * 109.73861 * 44.09825 * 14 13 9 22 22 H 1.09002 * 109.50346 * 170.24997 * 15 14 13 23 23 H 1.08997 * 109.50598 * 290.35962 * 15 14 13 24 24 H 1.00899 * 111.00197 * 162.50374 * 16 15 14 25 25 H 1.09006 * 109.33006 * 292.94875 * 17 16 15 26 26 H 1.09000 * 109.86233 * 172.41341 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1074 -1.3947 5 1 1.4968 2.6199 0.8029 6 1 3.5890 1.4120 0.5920 7 6 2.0090 -1.2130 -0.0005 8 1 3.0837 -1.2162 0.1064 9 6 1.3163 -2.4207 -0.1394 10 16 -0.4315 -2.5868 -0.1552 11 6 -0.2988 -4.3244 -0.3581 12 6 0.9963 -4.7056 -0.4058 13 6 1.9062 -3.6660 -0.2854 14 6 3.4125 -3.8903 -0.3113 15 6 3.6755 -5.3807 -0.0758 16 7 2.8430 -6.1714 -0.9927 17 6 1.4340 -6.1548 -0.5822 18 1 -0.4850 0.8401 0.0004 19 1 -1.1391 -4.9983 -0.4353 20 1 3.8121 -3.5947 -1.2815 21 1 3.8856 -3.3040 0.4764 22 1 4.7275 -5.5982 -0.2604 23 1 3.4258 -5.6360 0.9540 24 1 3.1867 -7.1169 -1.0689 25 1 1.3272 -6.6875 0.3628 26 1 0.8201 -6.6320 -1.3461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259614990.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = -13.704748 kcal Electronic energy + Delta-G solvation = -11570.354544 eV Core-core repulsion = 9545.271407 eV Total energy + Delta-G solvation = -2025.083137 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51704 -36.31012 -34.96155 -32.56122 -30.02492 -26.67205 -26.32378 -22.44856 -22.36280 -19.51268 -18.26359 -17.38716 -16.91000 -16.27142 -15.43821 -15.14793 -14.68107 -14.05046 -13.87946 -13.57537 -13.33094 -13.18771 -12.93460 -12.23878 -12.06691 -11.98639 -11.65464 -11.31354 -11.16252 -10.73673 -9.43975 -9.13816 -8.76516 -8.44019 -6.37125 0.84143 1.37094 1.51025 1.53777 1.79133 2.09268 2.22221 2.29340 3.12170 3.43001 4.25445 4.40015 4.56508 4.61525 4.70755 4.78337 4.87325 5.03535 5.11613 5.30461 5.44891 5.72975 5.95664 6.07306 6.24898 6.32326 6.65008 6.76107 6.81899 8.11718 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.042989 B = 0.011756 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.177568 B = 2381.241043 C = 2985.814873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.012 3.988 3 Si 1.007 2.993 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.420 4.420 8 H 0.096 0.904 9 C 0.004 3.996 10 S 0.093 5.907 11 C -0.426 4.426 12 C -0.048 4.048 13 C -0.336 4.336 14 C -0.015 4.015 15 C 0.072 3.928 16 N -0.693 5.693 17 C 0.127 3.873 18 H 0.303 0.697 19 H 0.131 0.869 20 H 0.041 0.959 21 H 0.049 0.951 22 H 0.095 0.905 23 H 0.023 0.977 24 H 0.354 0.646 25 H 0.039 0.961 26 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 -3.159 0.428 5.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.205 4.205 3 Si 0.826 3.174 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.176 1.176 7 C -0.455 4.455 8 H 0.114 0.886 9 C -0.116 4.116 10 S 0.355 5.645 11 C -0.561 4.561 12 C -0.060 4.060 13 C -0.343 4.343 14 C -0.054 4.054 15 C -0.058 4.058 16 N -0.325 5.325 17 C -0.005 4.005 18 H 0.116 0.884 19 H 0.149 0.851 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.113 0.887 23 H 0.041 0.959 24 H 0.173 0.827 25 H 0.057 0.943 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.919 -1.588 0.106 3.325 hybrid contribution 0.940 -0.886 0.612 1.429 sum 3.860 -2.474 0.718 4.640 Atomic orbital electron populations 1.68951 1.09000 1.31756 1.34412 1.27167 0.95841 1.05672 0.91808 0.84774 0.78863 0.74215 0.79544 1.18628 1.18697 1.17618 1.19419 0.96081 0.89698 1.40297 0.88628 1.22098 0.94978 0.96657 0.97839 1.84214 1.06501 0.98131 1.75688 1.25431 0.98917 1.01824 1.29966 1.19322 0.92035 0.95448 0.99196 1.19484 0.95892 0.91185 1.27776 1.19979 0.91220 0.95314 0.98929 1.21845 0.97238 0.93413 0.93259 1.60009 1.01950 1.17980 1.52577 1.20798 0.89486 0.91832 0.98346 0.88385 0.85133 0.94086 0.93297 0.88666 0.95856 0.82697 0.94302 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.19 10.66 21.86 0.23 -40.96 15 2 C 0.01 0.58 5.49 85.28 0.47 1.05 15 3 Si 1.01 36.63 29.57 68.60 2.03 38.66 15 4 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 5 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 6 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 7 C -0.42 -22.32 8.96 23.12 0.21 -22.11 15 8 H 0.10 4.83 7.20 -2.91 -0.02 4.81 15 9 C 0.00 0.23 6.17 22.75 0.14 0.37 15 10 S 0.09 5.00 20.24 -56.49 -1.14 3.85 15 11 C -0.43 -21.48 11.01 67.09 0.74 -20.74 15 12 C -0.05 -2.35 5.80 -19.93 -0.12 -2.47 15 13 C -0.34 -17.43 5.89 -19.16 -0.11 -17.54 15 14 C -0.01 -0.64 5.79 30.42 0.18 -0.46 15 15 C 0.07 2.47 6.51 86.35 0.56 3.03 15 16 N -0.69 -23.57 6.78 -514.89 -3.49 -27.06 15 17 C 0.13 4.80 6.76 86.13 0.58 5.38 15 18 H 0.30 13.71 8.30 -92.71 -0.77 12.94 15 19 H 0.13 5.97 8.06 -2.91 -0.02 5.95 15 20 H 0.04 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.05 2.08 7.76 -2.39 -0.02 2.06 15 22 H 0.10 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.02 0.81 8.04 -2.39 -0.02 0.79 15 24 H 0.35 9.10 8.90 -89.69 -0.80 8.30 15 25 H 0.04 1.37 8.14 -2.38 -0.02 1.35 15 26 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 Total: -1.00 -61.19 231.77 0.67 -60.52 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.39 Total: 18.48 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 2.65 Total: -53.49 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -3.26 Total: -68.01 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.14 Total: 3.85 kcal Total: -61.19 0.67 -60.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259614990.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.814 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds