Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48495 * 109.47085 * 239.99952 * 3 2 1 5 5 H 1.48503 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46722 * 119.99932 * 3 2 1 7 7 C 1.37869 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00448 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.59392 * 299.68620 * 9 7 2 11 11 C 1.52943 * 109.72878 * 179.29993 * 9 7 2 12 12 C 1.53084 * 109.28263 * 188.56104 * 11 9 7 13 13 C 1.53011 * 109.16640 * 72.28606 * 12 11 9 14 14 C 1.52182 * 108.68499 * 308.93776 * 13 12 11 15 15 C 1.35655 * 122.21162 * 196.87455 * 14 13 12 16 16 S 1.71674 * 106.09613 * 179.97438 * 15 14 13 17 17 N 1.69158 * 95.67737 * 0.02562 * 16 15 14 18 18 C 1.30971 * 107.99161 * 0.02562 * 17 16 15 19 19 H 0.97002 * 119.99877 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.49887 * 308.50556 * 11 9 7 21 21 H 1.09004 * 109.50256 * 68.61911 * 11 9 7 22 22 H 1.08994 * 109.51875 * 192.18657 * 12 11 9 23 23 H 1.08997 * 109.51923 * 312.31208 * 12 11 9 24 24 H 1.08997 * 109.60343 * 189.17574 * 13 12 11 25 25 H 1.09001 * 109.59427 * 68.69384 * 13 12 11 26 26 H 1.07997 * 126.95347 * 359.90143 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6275 -2.5612 0.8925 11 6 2.2397 -3.6660 -0.0164 12 6 1.4742 -4.9741 -0.2314 13 6 0.9874 -5.0388 -1.6806 14 6 0.2580 -3.7440 -2.0082 15 6 -0.5660 -3.6294 -3.0797 16 16 -1.1587 -2.0184 -3.0542 17 7 -0.3194 -1.5533 -1.6611 18 6 0.3754 -2.5826 -1.2449 19 1 -0.4850 0.8401 0.0004 20 1 2.9547 -3.5253 -0.8270 21 1 2.7705 -3.7071 0.9348 22 1 2.1330 -5.8188 -0.0305 23 1 0.6188 -5.0106 0.4432 24 1 0.3072 -5.8821 -1.8005 25 1 1.8410 -5.1567 -2.3480 26 1 -0.8007 -4.3961 -3.8032 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620081.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = 36.990787 kcal Electronic energy + Delta-G solvation = -11891.829471 eV Core-core repulsion = 9868.944658 eV Total energy + Delta-G solvation = -2022.884813 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.63139 -34.04009 -33.25592 -30.65249 -28.04190 -25.32123 -23.89338 -20.95721 -20.35572 -17.41301 -16.55669 -16.31257 -14.63215 -14.50408 -13.86912 -12.89773 -12.66978 -12.48624 -12.44746 -12.10968 -11.20045 -11.04937 -10.85217 -10.50516 -10.25967 -10.08987 -9.91684 -9.57006 -9.35730 -8.70013 -8.23696 -8.20708 -7.30621 -5.93204 -4.02613 1.94073 2.73678 3.30914 3.36615 3.39159 3.40990 3.76475 4.46172 5.31879 5.50664 5.54573 5.62334 5.67758 6.03632 6.22236 6.36107 6.39575 6.49342 6.64268 6.83363 6.86309 6.96963 7.39316 7.59928 7.92363 8.11439 8.37534 8.93068 9.57692 11.06183 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.015174 C = 0.011031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.075432 B = 1844.797776 C = 2537.623823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.114 3.886 10 H 0.049 0.951 11 C -0.108 4.108 12 C -0.121 4.121 13 C -0.044 4.044 14 C -0.154 4.154 15 C -0.238 4.238 16 S 0.073 5.927 17 N -0.311 5.311 18 C 0.129 3.871 19 H 0.262 0.738 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -7.738 -2.852 8.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.091 3.909 10 H 0.066 0.934 11 C -0.146 4.146 12 C -0.159 4.159 13 C -0.084 4.084 14 C -0.173 4.173 15 C -0.385 4.385 16 S 0.229 5.771 17 N -0.125 5.125 18 C -0.052 4.052 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.794 -5.629 -3.365 6.606 hybrid contribution 1.192 -0.633 0.093 1.353 sum 0.398 -6.262 -3.272 7.077 Atomic orbital electron populations 1.69698 1.05573 1.26214 1.43955 1.24977 0.94757 0.99105 0.95092 0.86670 0.79660 0.83251 0.78509 1.20415 1.21279 1.20199 1.20949 0.92867 0.89605 1.53099 0.92125 1.17941 0.90847 0.93646 0.88453 0.93365 1.21613 0.98380 0.93688 1.00925 1.21616 1.00051 0.98406 0.95813 1.20396 0.98172 0.92704 0.97174 1.21022 1.01980 0.97769 0.96535 1.25913 1.05421 1.03953 1.03261 1.84279 1.53113 1.03442 1.36275 1.79115 1.11186 1.21263 1.00943 1.23687 0.95423 0.86995 0.99119 0.92704 0.92600 0.92249 0.92611 0.92101 0.91871 0.91456 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.56 10.17 55.43 0.56 -22.99 15 2 C 0.07 1.85 4.99 -17.82 -0.09 1.76 15 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.53 -14.27 8.55 -34.44 -0.29 -14.56 15 8 H 0.06 1.61 7.75 -52.48 -0.41 1.20 15 9 C 0.11 2.80 2.44 -92.07 -0.22 2.58 15 10 H 0.05 1.27 8.14 -51.92 -0.42 0.85 15 11 C -0.11 -2.12 5.12 -26.72 -0.14 -2.25 15 12 C -0.12 -1.98 5.89 -26.68 -0.16 -2.14 15 13 C -0.04 -0.73 6.07 -27.14 -0.16 -0.89 15 14 C -0.15 -3.18 5.75 -104.35 -0.60 -3.78 15 15 C -0.24 -4.60 11.16 29.81 0.33 -4.27 15 16 S 0.07 1.60 23.70 -107.50 -2.55 -0.95 15 17 N -0.31 -8.24 8.10 33.65 0.27 -7.97 15 18 C 0.13 3.18 6.17 -81.61 -0.50 2.68 15 19 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 20 H 0.06 1.11 8.07 -51.93 -0.42 0.69 15 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.06 1.01 8.09 -51.93 -0.42 0.59 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.16 2.44 8.06 -52.49 -0.42 2.02 15 LS Contribution 229.96 15.07 3.47 3.47 Total: -1.00 -29.36 229.96 -8.02 -37.39 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -2.92 Total: -4.56 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -1.84 Total: -20.88 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.84 Total: -30.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.55 Total: -0.95 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.36 -8.02 -37.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620081.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.376 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds