Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48495 * 109.47085 * 239.99952 * 3 2 1 5 5 H 1.48503 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46722 * 119.99932 * 3 2 1 7 7 C 1.37869 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00448 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.59392 * 299.68620 * 9 7 2 11 11 C 1.52943 * 109.72878 * 179.29993 * 9 7 2 12 12 C 1.53084 * 109.28263 * 188.56104 * 11 9 7 13 13 C 1.53011 * 109.16640 * 72.28606 * 12 11 9 14 14 C 1.52182 * 108.68499 * 308.93776 * 13 12 11 15 15 C 1.35655 * 122.21162 * 196.87455 * 14 13 12 16 16 S 1.71674 * 106.09613 * 179.97438 * 15 14 13 17 17 N 1.69158 * 95.67737 * 0.02562 * 16 15 14 18 18 C 1.30971 * 107.99161 * 0.02562 * 17 16 15 19 19 H 0.97002 * 119.99877 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.49887 * 308.50556 * 11 9 7 21 21 H 1.09004 * 109.50256 * 68.61911 * 11 9 7 22 22 H 1.08994 * 109.51875 * 192.18657 * 12 11 9 23 23 H 1.08997 * 109.51923 * 312.31208 * 12 11 9 24 24 H 1.08997 * 109.60343 * 189.17574 * 13 12 11 25 25 H 1.09001 * 109.59427 * 68.69384 * 13 12 11 26 26 H 1.07997 * 126.95347 * 359.90143 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6275 -2.5612 0.8925 11 6 2.2397 -3.6660 -0.0164 12 6 1.4742 -4.9741 -0.2314 13 6 0.9874 -5.0388 -1.6806 14 6 0.2580 -3.7440 -2.0082 15 6 -0.5660 -3.6294 -3.0797 16 16 -1.1587 -2.0184 -3.0542 17 7 -0.3194 -1.5533 -1.6611 18 6 0.3754 -2.5826 -1.2449 19 1 -0.4850 0.8401 0.0004 20 1 2.9547 -3.5253 -0.8270 21 1 2.7705 -3.7071 0.9348 22 1 2.1330 -5.8188 -0.0305 23 1 0.6188 -5.0106 0.4432 24 1 0.3072 -5.8821 -1.8005 25 1 1.8410 -5.1567 -2.3480 26 1 -0.8007 -4.3961 -3.8032 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259620081.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = 19.848535 kcal Electronic energy + Delta-G solvation = -11892.572815 eV Core-core repulsion = 9868.944658 eV Total energy + Delta-G solvation = -2023.628157 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.28403 -35.67668 -35.09653 -32.46435 -29.74997 -26.95963 -25.74541 -22.55718 -21.97258 -19.10627 -18.35098 -18.17326 -16.53536 -16.11587 -15.41789 -14.57206 -14.32367 -14.18220 -13.90985 -13.84337 -12.98606 -12.83348 -12.62021 -12.32720 -11.81441 -11.73315 -11.46127 -11.43870 -11.07208 -10.54845 -10.17971 -9.95188 -9.01592 -8.00291 -6.14993 0.30898 1.12881 1.39000 1.40549 1.47009 1.57266 2.00456 2.45426 3.25569 4.06027 4.14054 4.25823 4.30726 4.63608 4.82503 4.89866 4.96423 5.02259 5.19771 5.30015 5.39671 5.46927 5.61168 5.78146 5.88298 6.22905 6.47667 6.89343 7.47832 8.97108 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.015174 C = 0.011031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.075432 B = 1844.797776 C = 2537.623823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.022 3.978 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.106 3.894 10 H 0.015 0.985 11 C -0.101 4.101 12 C -0.115 4.115 13 C -0.039 4.039 14 C -0.170 4.170 15 C -0.213 4.213 16 S 0.068 5.932 17 N -0.372 5.372 18 C 0.112 3.888 19 H 0.255 0.745 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -9.889 -3.860 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.083 3.917 10 H 0.033 0.967 11 C -0.140 4.140 12 C -0.153 4.153 13 C -0.079 4.079 14 C -0.188 4.188 15 C -0.360 4.360 16 S 0.223 5.777 17 N -0.187 5.187 18 C -0.069 4.069 19 H 0.064 0.936 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.055 -7.796 -4.356 8.930 hybrid contribution 0.921 -0.011 0.360 0.989 sum 0.866 -7.806 -3.995 8.812 Atomic orbital electron populations 1.69925 1.06760 1.26139 1.45275 1.25677 0.95447 1.02061 0.95007 0.85807 0.78507 0.79794 0.78670 1.20554 1.21464 1.18928 1.21302 0.92994 0.91147 1.53170 0.92310 1.17926 0.91375 0.94827 0.87582 0.96674 1.21527 0.97436 0.93724 1.01284 1.21587 1.00082 0.97577 0.96014 1.20549 0.99056 0.91148 0.97152 1.21387 1.02756 0.98378 0.96268 1.26391 1.03394 1.03028 1.03211 1.84098 1.52973 1.06008 1.34596 1.78879 1.12963 1.23569 1.03335 1.23921 0.95237 0.88290 0.99496 0.93554 0.92840 0.91535 0.88598 0.92865 0.88555 0.89539 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.49 10.17 21.45 0.22 -50.27 15 2 C 0.02 1.24 4.99 84.65 0.42 1.66 15 3 Si 0.95 45.15 29.54 68.60 2.03 47.17 15 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 15 6 H -0.26 -11.97 7.11 99.48 0.71 -11.27 15 7 C -0.55 -30.39 8.55 25.60 0.22 -30.17 15 8 H 0.06 3.17 7.75 -2.91 -0.02 3.15 15 9 C 0.11 5.29 2.44 -11.73 -0.03 5.27 15 10 H 0.02 0.85 8.14 -2.38 -0.02 0.83 15 11 C -0.10 -3.85 5.12 30.60 0.16 -3.69 15 12 C -0.12 -3.38 5.89 30.63 0.18 -3.20 15 13 C -0.04 -1.11 6.07 30.33 0.18 -0.92 15 14 C -0.17 -6.61 5.75 -19.69 -0.11 -6.72 15 15 C -0.21 -7.54 11.16 67.22 0.75 -6.79 15 16 S 0.07 2.94 23.70 -56.49 -1.34 1.60 15 17 N -0.37 -20.10 8.10 -47.44 -0.38 -20.48 15 18 C 0.11 5.52 6.17 43.56 0.27 5.78 15 19 H 0.25 14.87 8.31 -92.71 -0.77 14.10 15 20 H 0.05 2.03 8.07 -2.39 -0.02 2.01 15 21 H 0.07 2.37 8.14 -2.38 -0.02 2.35 15 22 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 23 H 0.05 1.64 8.09 -2.39 -0.02 1.62 15 24 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.20 5.19 8.06 -2.91 -0.02 5.17 15 Total: -1.00 -65.75 229.96 3.73 -62.02 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: 1.17 Total: -1.27 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 2.04 Total: -38.78 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -0.17 Total: -70.75 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.34 Total: 1.60 kcal Total: -65.75 3.73 -62.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620081.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.872 kcal (2) G-P(sol) polarization free energy of solvation -65.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds