Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34419 * 125.34876 * 2 1 4 4 C 1.41003 * 106.86103 * 180.02562 * 3 2 1 5 5 S 1.76083 * 147.14454 * 180.02562 * 4 3 2 6 6 N 1.56046 * 97.55563 * 179.78841 * 5 4 3 7 7 C 1.31265 * 111.02028 * 0.36586 * 6 5 4 8 8 C 1.41019 * 121.97266 * 179.83677 * 7 6 5 9 9 H 1.08004 * 119.99686 * 185.97413 * 8 7 6 10 10 C 1.39887 * 120.00339 * 5.69720 * 8 7 6 11 11 N 1.30890 * 119.99933 * 353.75201 * 10 8 7 12 12 Si 1.86799 * 120.00055 * 173.75448 * 10 8 7 13 13 H 1.48500 * 109.47349 * 94.98445 * 12 10 8 14 14 H 1.48498 * 109.47016 * 214.98862 * 12 10 8 15 15 H 1.48504 * 109.46742 * 334.98370 * 12 10 8 16 16 C 1.38351 * 107.19660 * 359.97438 * 4 3 2 17 17 O 1.34299 * 125.35271 * 179.97438 * 2 1 3 18 18 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47008 * 299.97103 * 1 2 3 20 20 H 1.08995 * 109.47207 * 59.98000 * 1 2 3 21 21 H 1.08000 * 126.57060 * 0.03673 * 3 2 1 22 22 H 0.96995 * 120.00313 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0964 0.0000 4 6 3.6220 0.6493 -0.0006 5 16 5.3277 1.0862 -0.0007 6 7 5.9104 -0.3614 0.0039 7 6 4.9495 -1.2557 -0.0020 8 6 5.2179 -2.6401 -0.0029 9 1 4.4078 -3.3471 -0.1052 10 6 6.5338 -3.0976 0.1228 11 7 7.5265 -2.2445 0.1182 12 14 6.8744 -4.9260 0.2971 13 1 7.1765 -5.5027 -1.0376 14 1 8.0367 -5.1292 1.1988 15 1 5.6807 -5.5995 0.8687 16 6 3.5908 -0.7339 -0.0004 17 8 2.2841 -1.0954 0.0005 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5134 0.8902 20 1 -0.3633 0.5141 -0.8898 21 1 1.9495 2.1230 0.0006 22 1 8.4390 -2.5616 0.2057 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259650873.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = 43.031139 kcal Electronic energy + Delta-G solvation = -11181.472808 eV Core-core repulsion = 9023.016829 eV Total energy + Delta-G solvation = -2158.455978 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.55437 -36.37617 -32.99576 -32.33500 -30.39965 -27.25428 -25.79686 -21.66671 -20.88253 -19.40632 -17.34807 -16.99201 -15.51826 -15.05589 -14.43218 -13.63472 -13.17584 -12.92082 -12.67318 -12.31361 -12.03752 -11.65036 -11.19946 -10.96701 -10.88048 -10.19274 -9.60282 -9.41784 -8.99575 -8.72026 -7.53544 -6.98819 -6.58480 -4.50148 2.05703 2.67724 2.99651 3.09622 3.12990 3.14931 3.57132 3.92711 3.94733 4.20408 5.20536 5.23277 5.47473 5.63517 5.63581 5.88636 6.20799 6.39779 6.77218 7.03961 7.13107 7.71928 7.85142 8.35638 8.63222 8.99486 10.28600 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.041273 B = 0.011340 C = 0.008945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.249325 B = 2468.530897 C = 3129.641873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.016 4.016 3 C -0.166 4.166 4 C -0.283 4.283 5 S 0.211 5.789 6 N -0.541 5.541 7 C 0.276 3.724 8 C -0.410 4.410 9 H 0.088 0.912 10 C 0.065 3.935 11 N -0.730 5.730 12 Si 0.917 3.083 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.035 4.035 17 O -0.155 6.155 18 H 0.073 0.927 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.142 0.858 22 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 1.802 0.113 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.190 4.190 4 C -0.405 4.405 5 S 0.360 5.640 6 N -0.371 5.371 7 C 0.116 3.884 8 C -0.455 4.455 9 H 0.106 0.894 10 C -0.159 4.159 11 N -0.356 5.356 12 Si 0.741 3.259 13 H -0.195 1.195 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.100 4.100 17 O -0.052 6.052 18 H 0.092 0.908 19 H 0.098 0.902 20 H 0.099 0.901 21 H 0.160 0.840 22 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.030 2.813 0.129 6.655 hybrid contribution -1.248 -1.807 0.093 2.198 sum -7.278 1.006 0.222 7.350 Atomic orbital electron populations 1.20222 0.85578 1.03566 1.02934 1.22441 0.93663 0.83975 1.06851 1.20195 0.89743 0.98562 1.10479 1.25464 1.03079 0.98738 1.13177 1.80689 0.87277 1.17270 1.78798 1.73763 1.23082 0.98130 1.42164 1.17883 0.79217 0.94853 0.96432 1.19126 0.93821 0.88972 1.43547 0.89359 1.25930 0.95741 1.00197 0.94054 1.70014 0.99911 1.35517 1.30176 0.86144 0.79018 0.81762 0.78981 1.19453 1.20028 1.18417 1.22971 0.84607 0.92049 1.10396 1.83888 1.14588 1.33408 1.73329 0.90835 0.90151 0.90142 0.84003 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.40 36.01 0.37 -0.44 14 2 C -0.02 -0.31 7.28 -35.66 -0.26 -0.57 14 3 C -0.17 -3.32 10.77 -39.88 -0.43 -3.75 14 4 C -0.28 -6.87 7.61 -38.49 -0.29 -7.16 14 5 S 0.21 5.24 23.35 -107.50 -2.51 2.73 14 6 N -0.54 -15.70 9.00 27.18 0.24 -15.46 14 7 C 0.28 7.92 6.56 -84.14 -0.55 7.37 14 8 C -0.41 -11.38 9.24 -37.91 -0.35 -11.73 14 9 H 0.09 2.30 7.85 -52.48 -0.41 1.89 14 10 C 0.06 1.70 5.49 -17.34 -0.10 1.61 14 11 N -0.73 -20.17 11.67 55.54 0.65 -19.52 14 12 Si 0.92 19.05 29.56 -169.99 -5.03 14.02 14 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 14 14 H -0.28 -5.58 7.11 56.52 0.40 -5.18 14 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 14 16 C -0.03 -0.92 8.07 -36.63 -0.30 -1.21 14 17 O -0.15 -3.62 10.68 2.05 0.02 -3.60 14 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 14 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 14 20 H 0.08 0.82 8.14 -51.93 -0.42 0.40 14 21 H 0.14 2.31 8.06 -52.49 -0.42 1.88 14 22 H 0.28 6.89 8.30 -40.82 -0.34 6.55 14 LS Contribution 219.63 15.07 3.31 3.31 Total: -1.00 -31.56 219.63 -6.45 -38.01 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -1.24 Total: -3.60 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.90 Total: -15.89 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.89 Total: -34.98 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: 0.02 Total: -3.60 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -2.51 Total: 2.73 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -31.56 -6.45 -38.01 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650873.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.039 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds