Wall clock time and date at job start Mon Mar 30 2020 02:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.62596 * 299.61691 * 9 7 2 11 11 N 1.47110 * 109.62704 * 60.00014 * 9 7 2 12 12 C 1.46980 * 110.89706 * 170.76316 * 11 9 7 13 13 C 1.53152 * 109.48370 * 288.12999 * 12 11 9 14 14 C 1.52326 * 108.19516 * 50.42421 * 13 12 11 15 15 C 1.38952 * 124.36403 * 163.30356 * 14 13 12 16 16 C 1.33026 * 115.62544 * 180.14137 * 15 14 13 17 17 S 1.75785 * 109.60774 * 359.96560 * 16 15 14 18 18 C 1.34806 * 121.88722 * 343.33981 * 14 13 12 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.00898 * 110.99667 * 294.64246 * 11 9 7 21 21 H 1.08996 * 109.47033 * 48.13125 * 12 11 9 22 22 H 1.08996 * 109.47048 * 168.12300 * 12 11 9 23 23 H 1.09011 * 109.71914 * 170.10148 * 13 12 11 24 24 H 1.08997 * 109.72071 * 290.70052 * 13 12 11 25 25 H 1.08003 * 122.18692 * 0.11517 * 15 14 13 26 26 H 1.08004 * 125.19837 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6289 -2.5627 0.8922 11 7 0.4035 -2.5804 -1.2002 12 6 -0.1743 -3.9242 -1.3439 13 6 0.9217 -4.9097 -1.7602 14 6 2.0995 -4.7407 -0.8091 15 6 3.1254 -5.6657 -0.6591 16 6 4.0666 -5.3429 0.2238 17 16 3.6906 -3.7839 0.9434 18 6 2.2312 -3.6520 -0.0250 19 1 -0.4850 0.8401 0.0004 20 1 -0.3189 -1.8763 -1.1808 21 1 -0.6034 -4.2387 -0.3926 22 1 -0.9539 -3.9049 -2.1054 23 1 0.5421 -5.9297 -1.6980 24 1 1.2390 -4.6971 -2.7810 25 1 3.1564 -6.5869 -1.2222 26 1 4.9301 -5.9464 0.4619 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259702366.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:11 Heat of formation + Delta-G solvation = 10.255331 kcal Electronic energy + Delta-G solvation = -11676.194145 eV Core-core repulsion = 9652.149996 eV Total energy + Delta-G solvation = -2024.044150 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.84677 -36.62959 -34.53012 -31.67613 -30.41699 -27.33062 -24.81730 -23.70609 -21.79087 -19.18164 -18.26325 -17.98513 -16.56848 -15.91761 -15.87115 -15.38477 -14.90768 -14.08607 -13.84649 -13.69432 -13.21678 -12.85084 -12.76022 -12.36019 -12.32364 -12.13286 -11.77099 -11.44450 -11.10254 -10.69467 -9.38061 -9.05103 -8.85074 -8.21818 -6.33151 0.31995 0.93747 1.38832 1.41003 1.41990 1.52905 1.96080 2.40792 3.05309 3.93562 4.05121 4.18742 4.45740 4.54985 4.68250 4.73171 4.91028 4.99823 5.04038 5.25754 5.33258 5.67762 5.69659 5.72146 6.10617 6.54021 6.85711 7.01699 7.38132 8.87431 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.035723 B = 0.012856 C = 0.009959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.628312 B = 2177.389049 C = 2810.869077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.025 3.975 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.280 3.720 10 H -0.029 1.029 11 N -0.686 5.686 12 C 0.046 3.954 13 C -0.039 4.039 14 C -0.141 4.141 15 C -0.128 4.128 16 C -0.230 4.230 17 S 0.076 5.924 18 C -0.169 4.169 19 H 0.268 0.732 20 H 0.351 0.649 21 H 0.007 0.993 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.164 0.836 26 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 -9.294 -1.352 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.171 3.829 10 H -0.012 1.012 11 N -0.322 5.322 12 C -0.084 4.084 13 C -0.079 4.079 14 C -0.153 4.153 15 C -0.158 4.158 16 C -0.365 4.365 17 S 0.340 5.660 18 C -0.287 4.287 19 H 0.077 0.923 20 H 0.173 0.827 21 H 0.025 0.975 22 H 0.101 0.899 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.182 0.818 26 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.939 -8.394 -0.671 9.762 hybrid contribution -1.181 0.306 -0.146 1.228 sum 3.758 -8.088 -0.817 8.956 Atomic orbital electron populations 1.69780 1.07122 1.28052 1.50968 1.25732 0.95814 1.02447 0.93492 0.85480 0.78617 0.78789 0.78301 1.19900 1.19630 1.20332 1.21335 0.92887 0.90694 1.51280 0.92532 1.17543 0.88476 0.89691 0.87179 1.01199 1.60848 1.25977 1.04156 1.41209 1.22047 0.96582 0.91071 0.98729 1.20568 0.91277 0.99079 0.96960 1.20022 1.00099 0.94257 1.00939 1.20139 0.93826 1.01232 1.00644 1.25743 1.05861 1.00107 1.04756 1.83986 1.20328 1.18116 1.43586 1.25379 1.00705 1.00299 1.02272 0.92273 0.82680 0.97505 0.89857 0.88368 0.90400 0.81840 0.79006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.16 11.57 21.45 0.25 -51.91 15 2 C 0.03 1.39 5.39 84.66 0.46 1.85 15 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 7 C -0.52 -29.73 8.54 25.60 0.22 -29.51 15 8 H 0.06 3.22 7.26 -2.91 -0.02 3.20 15 9 C 0.28 15.04 2.73 43.58 0.12 15.16 15 10 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 15 11 N -0.69 -34.31 6.41 -497.37 -3.19 -37.50 15 12 C 0.05 1.81 6.49 86.34 0.56 2.37 15 13 C -0.04 -1.34 6.41 30.42 0.20 -1.15 15 14 C -0.14 -5.53 5.82 -19.96 -0.12 -5.64 15 15 C -0.13 -4.05 10.03 21.28 0.21 -3.84 15 16 C -0.23 -7.07 11.21 66.66 0.75 -6.33 15 17 S 0.08 3.00 22.52 -56.49 -1.27 1.72 15 18 C -0.17 -7.81 5.87 25.10 0.15 -7.66 15 19 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 20 H 0.35 18.71 6.96 -89.70 -0.62 18.09 15 21 H 0.01 0.28 8.05 -2.39 -0.02 0.26 15 22 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 23 H 0.10 2.62 8.14 -2.38 -0.02 2.60 15 24 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.16 3.88 8.06 -2.91 -0.02 3.86 15 26 H 0.19 4.29 8.06 -2.91 -0.02 4.27 15 Total: -1.00 -62.43 233.12 0.92 -61.51 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.56 Total: 14.82 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 2.54 Total: -34.75 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.94 Total: -89.41 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.27 Total: 1.72 kcal Total: -62.43 0.92 -61.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259702366.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.767 kcal (2) G-P(sol) polarization free energy of solvation -62.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds