Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30570 * 1 3 3 Si 1.86800 * 119.99847 * 2 1 4 4 H 1.48504 * 109.47014 * 270.00310 * 3 2 1 5 5 H 1.48494 * 109.47107 * 30.00262 * 3 2 1 6 6 H 1.48496 * 109.46977 * 150.00458 * 3 2 1 7 7 C 1.40335 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00065 * 163.51139 * 7 2 1 9 9 C 1.41039 * 120.00336 * 343.79417 * 7 2 1 10 10 C 1.40983 * 121.07550 * 335.32643 * 9 7 2 11 11 C 1.37790 * 119.14658 * 179.72996 * 10 9 7 12 12 N 1.32078 * 121.46728 * 0.55879 * 11 10 9 13 13 C 1.32253 * 122.43188 * 359.71872 * 12 11 10 14 14 O 1.35414 * 119.68877 * 180.02562 * 13 12 11 15 15 C 1.40121 * 120.62567 * 359.97438 * 13 12 11 16 16 C 1.46931 * 120.75912 * 180.02562 * 15 13 12 17 17 O 1.21563 * 120.00475 * 269.97909 * 16 15 13 18 18 O 1.34847 * 119.99471 * 89.98077 * 16 15 13 19 19 H 0.97005 * 120.00403 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.42499 * 359.97438 * 10 9 7 21 21 H 1.08006 * 119.26070 * 180.29699 * 11 10 9 22 22 H 0.96706 * 113.99705 * 269.97054 * 14 13 12 23 23 H 0.96697 * 116.99454 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.4871 2.0465 -1.4001 5 1 1.4371 2.6526 0.7001 6 1 3.5372 1.4402 0.6999 7 6 2.0074 -1.2153 -0.0005 8 1 3.0540 -1.2345 -0.2660 9 6 1.3443 -2.4127 0.3398 10 6 0.1926 -2.4010 1.1529 11 6 -0.4271 -3.5937 1.4561 12 7 0.0404 -4.7461 1.0111 13 6 1.1186 -4.8277 0.2496 14 8 1.5489 -6.0390 -0.1762 15 6 1.8192 -3.6724 -0.1218 16 6 3.0170 -3.7596 -0.9682 17 8 4.1137 -3.8834 -0.4587 18 8 2.8997 -3.7021 -2.3104 19 1 -0.4851 0.8401 0.0004 20 1 -0.2013 -1.4687 1.5299 21 1 -1.3123 -3.5865 2.0748 22 1 2.1784 -6.4651 0.4216 23 1 3.7158 -3.7640 -2.8253 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259705058.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -138.816195 kcal Electronic energy + Delta-G solvation = -13404.613927 eV Core-core repulsion = 10795.519586 eV Total energy + Delta-G solvation = -2609.094342 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39226 -40.04923 -37.98543 -36.88746 -36.03435 -33.07081 -30.89715 -28.35143 -25.49494 -23.57585 -22.30198 -20.26672 -19.11960 -18.50868 -17.94565 -17.72527 -16.86516 -16.33460 -15.75951 -15.32299 -14.57821 -14.32715 -13.92401 -13.44256 -13.34794 -12.96522 -12.55894 -12.46092 -12.45194 -12.02392 -11.66705 -11.37049 -10.28006 -10.06529 -9.56604 -8.92366 -6.84648 0.35024 0.74466 1.25654 1.35884 1.46306 1.52510 2.11510 2.44223 2.51134 2.96397 3.40250 4.19158 4.57673 4.69364 4.72458 4.98274 5.03335 5.23963 5.55866 5.62310 5.80689 6.19770 6.42450 6.52835 6.77799 7.12204 7.40704 8.02260 Molecular weight = 209.05amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.013431 C = 0.010236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.728895 B = 2084.186628 C = 2734.776201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.046 3.954 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.252 1.252 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.228 4.228 11 C 0.115 3.885 12 N -0.598 5.598 13 C 0.355 3.645 14 O -0.495 6.495 15 C -0.334 4.334 16 C 0.581 3.419 17 O -0.555 6.555 18 O -0.508 6.508 19 H 0.305 0.695 20 H 0.136 0.864 21 H 0.168 0.832 22 H 0.409 0.591 23 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 1.305 -0.348 2.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.176 4.176 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.175 1.175 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.132 3.868 10 C -0.250 4.250 11 C -0.032 4.032 12 N -0.323 5.323 13 C 0.175 3.825 14 O -0.304 6.304 15 C -0.342 4.342 16 C 0.426 3.574 17 O -0.447 6.447 18 O -0.320 6.320 19 H 0.117 0.883 20 H 0.153 0.847 21 H 0.185 0.815 22 H 0.268 0.732 23 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 0.844 0.758 -0.256 1.163 hybrid contribution 1.520 1.033 -0.312 1.863 sum 2.364 1.791 -0.568 3.019 Atomic orbital electron populations 1.69651 1.09072 1.32432 1.29534 1.26890 0.95654 1.04643 0.90410 0.85086 0.79115 0.74949 0.80069 1.18247 1.17499 1.18542 1.19868 0.97651 0.91900 1.39914 0.90660 1.17864 0.90949 0.90455 0.87572 1.22248 1.00217 0.99160 1.03349 1.22435 0.98199 0.86520 0.95998 1.66978 1.15796 1.30753 1.18742 1.18801 0.89180 0.83475 0.91036 1.84563 1.65391 1.31023 1.49445 1.19876 1.04271 0.96257 1.13838 1.20480 0.88121 0.68164 0.80599 1.90755 1.29765 1.48532 1.75675 1.84778 1.43292 1.84514 1.19438 0.88345 0.84653 0.81459 0.73152 0.72099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.03 10.93 21.89 0.24 -35.79 14 2 C 0.05 2.08 5.21 85.39 0.44 2.53 14 3 Si 0.99 34.24 29.59 68.60 2.03 36.27 14 4 H -0.26 -8.65 7.11 99.48 0.71 -7.95 14 5 H -0.25 -7.91 7.11 99.48 0.71 -7.21 14 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 14 7 C -0.46 -23.77 8.59 23.47 0.20 -23.56 14 8 H 0.08 3.89 7.34 -2.91 -0.02 3.87 14 9 C 0.14 7.31 5.62 -20.90 -0.12 7.19 14 10 C -0.23 -11.10 8.78 22.84 0.20 -10.90 14 11 C 0.12 5.17 11.14 84.55 0.94 6.11 14 12 N -0.60 -28.39 10.34 -308.43 -3.19 -31.58 14 13 C 0.36 17.08 7.76 85.09 0.66 17.74 14 14 O -0.50 -20.45 13.01 -87.09 -1.13 -21.58 14 15 C -0.33 -17.01 5.83 -19.53 -0.11 -17.12 14 16 C 0.58 27.36 6.17 70.10 0.43 27.80 14 17 O -0.56 -27.09 17.90 19.63 0.35 -26.74 14 18 O -0.51 -20.29 13.44 -57.59 -0.77 -21.06 14 19 H 0.30 12.21 8.29 -92.70 -0.77 11.44 14 20 H 0.14 6.48 6.23 -2.91 -0.02 6.46 14 21 H 0.17 6.10 8.06 -2.91 -0.02 6.07 14 22 H 0.41 12.75 9.06 -74.05 -0.67 12.08 14 23 H 0.42 11.27 9.11 -74.06 -0.67 10.60 14 Total: -1.00 -63.99 223.74 0.12 -63.88 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.06 Total: 26.82 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 2.65 Total: 9.79 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -2.95 Total: -67.37 kcal Atomic # 8 Polarization: -67.83 SS G_CDS: -1.56 Total: -69.39 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Total: -63.99 0.12 -63.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259705058.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.941 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds