Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48492 * 109.47775 * 274.99030 * 3 2 1 5 5 H 1.48500 * 109.47158 * 34.99229 * 3 2 1 6 6 H 1.48503 * 109.46899 * 154.98579 * 3 2 1 7 7 C 1.37872 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 189.56091 * 7 2 1 9 9 C 1.50700 * 119.99707 * 9.56772 * 7 2 1 10 10 H 1.09002 * 109.61086 * 305.68383 * 9 7 2 11 11 N 1.46902 * 109.61338 * 66.20839 * 9 7 2 12 12 C 1.47168 * 111.29265 * 172.44002 * 11 9 7 13 13 C 1.53348 * 109.00062 * 288.09153 * 12 11 9 14 14 C 1.51413 * 108.11510 * 48.85077 * 13 12 11 15 15 S 1.75593 * 125.99920 * 164.41180 * 14 13 12 16 16 C 1.75793 * 91.04047 * 180.02562 * 15 14 13 17 17 C 1.33018 * 109.60350 * 359.97438 * 16 15 14 18 18 C 1.34804 * 123.95524 * 344.43696 * 14 13 12 19 19 H 0.97009 * 119.99892 * 359.97438 * 1 2 3 20 20 H 1.00903 * 110.99824 * 296.57226 * 11 9 7 21 21 H 1.08998 * 109.58132 * 168.23291 * 12 11 9 22 22 H 1.08994 * 109.57078 * 47.95051 * 12 11 9 23 23 H 1.08996 * 109.74904 * 289.18259 * 13 12 11 24 24 H 1.09006 * 109.74423 * 168.51608 * 13 12 11 25 25 H 1.07996 * 125.19567 * 179.97438 * 16 15 14 26 26 H 1.07998 * 122.16566 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1074 -1.3946 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4120 0.5920 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2006 0.1548 9 6 1.2667 -2.4899 -0.2180 10 1 0.4524 -2.5726 0.5019 11 7 0.7275 -2.5270 -1.5840 12 6 0.1550 -3.8462 -1.8969 13 6 1.2949 -4.8584 -2.0632 14 6 2.2274 -4.7161 -0.8788 15 16 3.4542 -5.8718 -0.3864 16 6 3.9218 -4.8486 0.9644 17 6 3.1712 -3.7504 0.9731 18 6 2.2254 -3.6595 -0.0416 19 1 -0.4850 0.8401 0.0004 20 1 0.0467 -1.7955 -1.7240 21 1 -0.4169 -3.7860 -2.8228 22 1 -0.4981 -4.1630 -1.0838 23 1 1.8378 -4.6534 -2.9858 24 1 0.8883 -5.8694 -2.0922 25 1 4.6995 -5.0767 1.6781 26 1 3.2884 -2.9798 1.7206 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259758612.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = 10.450873 kcal Electronic energy + Delta-G solvation = -11680.578088 eV Core-core repulsion = 9656.542417 eV Total energy + Delta-G solvation = -2024.035670 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.91399 -36.31748 -34.82617 -31.96230 -30.16276 -27.28106 -24.80330 -23.64483 -21.98829 -19.10572 -18.27977 -17.87799 -16.68336 -16.02860 -15.88625 -15.30282 -14.87800 -14.15447 -13.82250 -13.62458 -13.36220 -12.89477 -12.76485 -12.44524 -12.38989 -12.12342 -11.99493 -11.26011 -11.08277 -10.68994 -9.29887 -9.14495 -8.83684 -8.17698 -6.27466 0.22848 0.88235 1.16882 1.41586 1.44632 1.53839 1.97966 2.44176 3.06867 3.83776 3.96461 4.26928 4.34230 4.59220 4.62889 4.77181 4.89312 4.93033 5.07518 5.24531 5.33539 5.59282 5.69721 5.74081 6.22941 6.62550 6.81979 6.97066 7.41143 8.90190 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.040317 B = 0.011353 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.326902 B = 2465.810929 C = 2975.817680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.025 3.975 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.272 3.728 10 H -0.024 1.024 11 N -0.689 5.689 12 C 0.053 3.947 13 C -0.032 4.032 14 C -0.205 4.205 15 S 0.102 5.898 16 C -0.218 4.218 17 C -0.133 4.133 18 C -0.104 4.104 19 H 0.266 0.734 20 H 0.341 0.659 21 H 0.089 0.911 22 H 0.011 0.989 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.191 0.809 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -9.367 -1.642 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.162 3.838 10 H -0.007 1.007 11 N -0.321 5.321 12 C -0.078 4.078 13 C -0.072 4.072 14 C -0.322 4.322 15 S 0.366 5.634 16 C -0.352 4.352 17 C -0.164 4.164 18 C -0.116 4.116 19 H 0.075 0.925 20 H 0.160 0.840 21 H 0.108 0.892 22 H 0.029 0.971 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.208 0.792 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.024 -10.834 -2.444 12.190 hybrid contribution -1.114 2.587 1.266 3.088 sum 3.910 -8.247 -1.178 9.203 Atomic orbital electron populations 1.69983 1.07192 1.27860 1.51142 1.25709 0.95630 1.02336 0.93791 0.85531 0.78736 0.79164 0.78082 1.20188 1.20785 1.19484 1.21213 0.94104 0.91187 1.48743 0.92845 1.17818 0.90030 0.90350 0.85590 1.00697 1.60800 1.39479 1.03955 1.27910 1.22066 0.95010 0.90883 0.99871 1.20364 0.93827 0.99334 0.93645 1.25050 1.04725 0.98651 1.03777 1.83272 1.32276 1.23024 1.24812 1.25611 1.06866 0.98567 1.04176 1.20075 0.96957 0.99053 1.00284 1.20214 0.99302 0.96271 0.95808 0.92522 0.84027 0.89234 0.97088 0.89826 0.88542 0.79234 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.55 12.36 21.45 0.27 -52.28 15 2 C 0.03 1.39 5.29 84.65 0.45 1.84 15 3 Si 0.96 43.86 29.55 68.60 2.03 45.89 15 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.51 -28.88 8.30 25.60 0.21 -28.67 15 8 H 0.05 3.02 7.34 -2.91 -0.02 3.00 15 9 C 0.27 14.37 2.56 43.92 0.11 14.49 15 10 H -0.02 -1.44 8.08 -2.39 -0.02 -1.46 15 11 N -0.69 -33.44 6.39 -495.47 -3.17 -36.61 15 12 C 0.05 2.04 6.57 86.37 0.57 2.60 15 13 C -0.03 -1.08 6.50 30.19 0.20 -0.89 15 14 C -0.21 -7.99 6.42 25.12 0.16 -7.83 15 15 S 0.10 3.14 23.32 -56.49 -1.32 1.82 15 16 C -0.22 -7.09 11.21 66.66 0.75 -6.35 15 17 C -0.13 -5.46 9.17 21.29 0.20 -5.26 15 18 C -0.10 -4.77 5.43 -19.97 -0.11 -4.88 15 19 H 0.27 14.32 8.31 -92.70 -0.77 13.55 15 20 H 0.34 17.59 7.78 -89.69 -0.70 16.89 15 21 H 0.09 2.90 8.14 -2.39 -0.02 2.89 15 22 H 0.01 0.44 8.06 -2.39 -0.02 0.42 15 23 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 24 H 0.10 2.61 8.14 -2.38 -0.02 2.59 15 25 H 0.19 4.68 8.06 -2.91 -0.02 4.66 15 26 H 0.13 5.36 7.92 -2.91 -0.02 5.34 15 Total: -1.00 -61.36 234.37 0.83 -60.53 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.49 Total: 15.60 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 2.53 Total: -34.95 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -2.90 Total: -88.89 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.32 Total: 1.82 kcal Total: -61.36 0.83 -60.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259758612.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.981 kcal (2) G-P(sol) polarization free energy of solvation -61.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds