Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 11 11 C 1.52996 * 109.46946 * 299.99459 * 9 7 2 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46978 * 60.00410 * 12 11 9 14 14 H 1.09000 * 109.47140 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47415 * 59.99902 * 13 12 11 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47328 * 59.99531 * 16 15 13 18 18 C 1.53002 * 109.47346 * 300.00400 * 17 16 15 19 19 C 1.52992 * 109.47106 * 59.99981 * 18 17 16 20 20 H 1.08998 * 109.46862 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47482 * 60.00162 * 19 18 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47554 * 299.99877 * 11 9 7 24 24 H 1.09004 * 109.47108 * 60.00127 * 11 9 7 25 25 H 1.09002 * 109.47097 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.47142 * 300.00176 * 12 11 9 27 27 H 1.09004 * 109.46733 * 299.99664 * 15 13 12 28 28 H 1.08992 * 109.47063 * 59.99950 * 15 13 12 29 29 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.46968 * 299.99808 * 16 15 13 31 31 H 1.09000 * 109.46870 * 60.00217 * 17 16 15 32 32 H 1.08996 * 109.47261 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.46550 * 299.99576 * 18 17 16 35 35 H 1.09002 * 109.47153 * 59.99783 * 21 19 18 36 36 H 1.09001 * 109.46832 * 299.99974 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 6 0.3711 -2.5800 1.2495 12 6 -0.3944 -3.9048 1.2492 13 6 0.5995 -5.0680 1.2495 14 1 0.0542 -6.0118 1.2497 15 6 1.4787 -4.9873 2.4990 16 6 2.4730 -6.1502 2.4989 17 6 3.3529 -6.0688 1.2499 18 6 2.4737 -6.1495 0.0004 19 6 1.4795 -4.9866 0.0005 20 1 0.8528 -5.0444 -0.8895 21 6 2.2445 -3.6616 0.0010 22 1 -0.4850 0.8400 -0.0004 23 1 0.9974 -2.5221 2.1396 24 1 -0.3373 -1.7515 1.2491 25 1 -1.0217 -3.9622 2.1387 26 1 -1.0208 -3.9622 0.3590 27 1 2.0241 -4.0435 2.4991 28 1 0.8518 -5.0449 3.3887 29 1 3.0991 -6.0930 3.3893 30 1 1.9280 -7.0942 2.4985 31 1 3.8979 -5.1249 1.2504 32 1 4.0615 -6.8970 1.2501 33 1 3.1005 -6.0911 -0.8894 34 1 1.9287 -7.0935 0.0000 35 1 2.8714 -3.6036 -0.8888 36 1 2.8709 -3.6041 0.8912 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259778225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = -46.225255 kcal Electronic energy + Delta-G solvation = -14663.507179 eV Core-core repulsion = 12531.353076 eV Total energy + Delta-G solvation = -2132.154103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49068 -34.72942 -32.35715 -31.38885 -29.22199 -27.72088 -24.74094 -22.83895 -21.60684 -20.64460 -19.71283 -17.07142 -16.15296 -14.94073 -14.74717 -14.22699 -13.96554 -13.33008 -13.01589 -12.51872 -12.20269 -11.80805 -11.53415 -11.41193 -11.24842 -10.99449 -10.90758 -10.62678 -10.47362 -10.15083 -9.90505 -9.72628 -9.57246 -9.46404 -9.03185 -8.68111 -8.46813 -8.19122 -5.90442 -3.96408 3.33759 3.40503 3.43782 4.49173 5.14432 5.17949 5.21723 5.38852 5.67814 5.68984 5.88153 5.89838 5.94285 5.99168 6.05825 6.36225 6.36909 6.43232 6.44178 6.46381 6.59710 6.66014 6.72510 6.77904 6.86118 6.96155 7.02281 7.13922 7.32993 7.41256 7.66866 7.84155 8.14098 8.27148 8.57088 9.08340 9.67725 11.14753 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.009553 C = 0.008942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.720943 B = 2930.219825 C = 3130.603103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.052 0.948 9 C 0.049 3.951 10 H 0.021 0.979 11 C -0.109 4.109 12 C -0.115 4.115 13 C -0.074 4.074 14 H 0.049 0.951 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.112 4.112 19 C -0.083 4.083 20 H 0.059 0.941 21 C -0.102 4.102 22 H 0.258 0.742 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -10.237 2.971 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.031 3.969 10 H 0.039 0.961 11 C -0.147 4.147 12 C -0.152 4.152 13 C -0.092 4.092 14 H 0.067 0.933 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.101 4.101 20 H 0.078 0.922 21 C -0.139 4.139 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.349 -10.108 2.974 10.796 hybrid contribution 0.403 0.923 -0.020 1.007 sum 2.752 -9.186 2.954 10.034 Atomic orbital electron populations 1.69886 1.05808 1.26112 1.51186 1.24963 0.94807 0.98878 0.95390 0.86686 0.79934 0.83914 0.77990 1.20840 1.21345 1.20025 1.21257 0.92799 0.90893 1.49889 0.92961 1.18616 0.92687 0.91419 0.94208 0.96074 1.21614 0.99467 0.94891 0.98719 1.21655 0.97172 0.96751 0.99657 1.21039 0.95885 0.97680 0.94635 0.93273 1.21674 0.97482 0.99107 0.97252 1.21506 0.97760 0.98684 0.97337 1.21551 0.97697 1.01521 0.94975 1.21558 0.97803 0.98269 0.97335 1.21163 0.96205 0.95515 0.97258 0.92223 1.21707 0.98541 0.93742 0.99941 0.93209 0.94631 0.89478 0.94184 0.93187 0.90383 0.93097 0.92878 0.92933 0.91365 0.93198 0.92647 0.93115 0.94063 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 11.32 55.43 0.63 -25.12 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.23 2.10 -91.82 -0.19 1.04 16 10 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 11 C -0.11 -2.58 4.70 -26.73 -0.13 -2.71 16 12 C -0.11 -2.27 5.45 -26.73 -0.15 -2.41 16 13 C -0.07 -1.28 2.47 -90.62 -0.22 -1.51 16 14 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.12 -1.92 4.59 -26.73 -0.12 -2.04 16 16 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 17 C -0.12 -1.70 5.65 -26.73 -0.15 -1.85 16 18 C -0.11 -1.68 5.45 -26.73 -0.15 -1.82 16 19 C -0.08 -1.48 2.46 -90.62 -0.22 -1.70 16 20 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 21 C -0.10 -2.13 3.80 -26.78 -0.10 -2.24 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.03 0.83 6.43 -51.93 -0.33 0.50 16 24 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.44 4.81 -51.93 -0.25 1.19 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.05 1.12 4.81 -51.93 -0.25 0.87 16 LS Contribution 260.94 15.07 3.93 3.93 Total: -1.00 -27.78 260.94 -8.54 -36.32 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.10 Total: -1.80 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -1.98 Total: -29.87 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.63 Total: -25.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.78 -8.54 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.909 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds