Wall clock time and date at job start Mon Mar 30 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 11 11 C 1.52996 * 109.46946 * 299.99459 * 9 7 2 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46978 * 60.00410 * 12 11 9 14 14 H 1.09000 * 109.47140 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47415 * 59.99902 * 13 12 11 16 16 C 1.53000 * 109.47233 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47328 * 59.99531 * 16 15 13 18 18 C 1.53002 * 109.47346 * 300.00400 * 17 16 15 19 19 C 1.52992 * 109.47106 * 59.99981 * 18 17 16 20 20 H 1.08998 * 109.46862 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47482 * 60.00162 * 19 18 17 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47554 * 299.99877 * 11 9 7 24 24 H 1.09004 * 109.47108 * 60.00127 * 11 9 7 25 25 H 1.09002 * 109.47097 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.47142 * 300.00176 * 12 11 9 27 27 H 1.09004 * 109.46733 * 299.99664 * 15 13 12 28 28 H 1.08992 * 109.47063 * 59.99950 * 15 13 12 29 29 H 1.09001 * 109.47194 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.46968 * 299.99808 * 16 15 13 31 31 H 1.09000 * 109.46870 * 60.00217 * 17 16 15 32 32 H 1.08996 * 109.47261 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.46550 * 299.99576 * 18 17 16 35 35 H 1.09002 * 109.47153 * 59.99783 * 21 19 18 36 36 H 1.09001 * 109.46832 * 299.99974 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 6 0.3711 -2.5800 1.2495 12 6 -0.3944 -3.9048 1.2492 13 6 0.5995 -5.0680 1.2495 14 1 0.0542 -6.0118 1.2497 15 6 1.4787 -4.9873 2.4990 16 6 2.4730 -6.1502 2.4989 17 6 3.3529 -6.0688 1.2499 18 6 2.4737 -6.1495 0.0004 19 6 1.4795 -4.9866 0.0005 20 1 0.8528 -5.0444 -0.8895 21 6 2.2445 -3.6616 0.0010 22 1 -0.4850 0.8400 -0.0004 23 1 0.9974 -2.5221 2.1396 24 1 -0.3373 -1.7515 1.2491 25 1 -1.0217 -3.9622 2.1387 26 1 -1.0208 -3.9622 0.3590 27 1 2.0241 -4.0435 2.4991 28 1 0.8518 -5.0449 3.3887 29 1 3.0991 -6.0930 3.3893 30 1 1.9280 -7.0942 2.4985 31 1 3.8979 -5.1249 1.2504 32 1 4.0615 -6.8970 1.2501 33 1 3.1005 -6.0911 -0.8894 34 1 1.9287 -7.0935 0.0000 35 1 2.8714 -3.6036 -0.8888 36 1 2.8709 -3.6041 0.8912 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259778225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:09 Heat of formation + Delta-G solvation = -59.823339 kcal Electronic energy + Delta-G solvation = -14664.096836 eV Core-core repulsion = 12531.353076 eV Total energy + Delta-G solvation = -2132.743760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95557 -36.41658 -34.19140 -32.89891 -30.89042 -29.21604 -26.74578 -24.31265 -22.91179 -22.35402 -21.27555 -18.62433 -18.22468 -16.67635 -16.26129 -15.88072 -15.30600 -14.80161 -14.56341 -14.16765 -13.94127 -13.34344 -13.11995 -12.90453 -12.76171 -12.70032 -12.65299 -12.22273 -12.15318 -11.75150 -11.58306 -11.33308 -11.13823 -11.02450 -10.65333 -10.39807 -10.30050 -10.25974 -8.05699 -6.20139 1.39056 1.39568 1.49938 2.43224 3.19540 3.86739 3.91767 3.95911 4.35572 4.37877 4.56494 4.59130 4.62619 4.71680 4.84758 4.86053 4.91231 4.93199 5.06014 5.09905 5.18430 5.22276 5.26816 5.34895 5.43744 5.50929 5.51504 5.54486 5.60574 5.65917 5.81246 5.84052 6.10754 6.26904 6.45286 6.93657 7.47546 8.97632 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.009553 C = 0.008942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.720943 B = 2930.219825 C = 3130.603103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.048 0.952 9 C 0.045 3.955 10 H -0.016 1.016 11 C -0.100 4.100 12 C -0.110 4.110 13 C -0.070 4.070 14 H 0.076 0.924 15 C -0.117 4.117 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.107 4.107 19 C -0.082 4.082 20 H 0.049 0.951 21 C -0.091 4.091 22 H 0.259 0.741 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 -11.959 3.767 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.066 0.934 9 C 0.027 3.973 10 H 0.002 0.998 11 C -0.138 4.138 12 C -0.148 4.148 13 C -0.088 4.088 14 H 0.094 0.906 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.158 4.158 18 C -0.144 4.144 19 C -0.101 4.101 20 H 0.068 0.932 21 C -0.129 4.129 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.223 -11.838 3.769 12.835 hybrid contribution 0.109 1.494 -0.291 1.526 sum 3.332 -10.345 3.477 11.411 Atomic orbital electron populations 1.70037 1.07132 1.26860 1.51668 1.25746 0.95667 1.02297 0.95058 0.85679 0.78841 0.79723 0.78167 1.20268 1.20845 1.19294 1.21644 0.92862 0.92562 1.50058 0.93400 1.18603 0.93165 0.92386 0.93157 0.99824 1.21391 0.98608 0.96036 0.97729 1.21584 0.97543 0.95720 0.99949 1.21029 0.95449 0.97391 0.94931 0.90581 1.21638 0.97826 0.99015 0.96966 1.21484 0.97333 0.98192 0.97744 1.21563 0.97945 1.01615 0.94657 1.21516 0.97289 0.97514 0.98082 1.21130 0.96683 0.94954 0.97294 0.93230 1.21539 0.97646 0.94155 0.99517 0.93218 0.95037 0.93177 0.92560 0.94195 0.93232 0.92020 0.91518 0.90956 0.93254 0.90619 0.92337 0.90845 0.94926 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 11.32 21.45 0.24 -54.50 16 2 C 0.01 0.60 5.30 84.66 0.45 1.05 16 3 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -30.53 8.56 25.60 0.22 -30.31 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.36 2.10 -11.57 -0.02 2.33 16 10 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 11 C -0.10 -4.86 4.70 30.59 0.14 -4.72 16 12 C -0.11 -4.33 5.45 30.59 0.17 -4.17 16 13 C -0.07 -2.28 2.47 -10.79 -0.03 -2.30 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C -0.12 -3.54 4.59 30.60 0.14 -3.40 16 16 C -0.11 -2.65 5.92 30.59 0.18 -2.47 16 17 C -0.12 -3.02 5.65 30.59 0.17 -2.85 16 18 C -0.11 -2.87 5.45 30.59 0.17 -2.70 16 19 C -0.08 -2.83 2.46 -10.79 -0.03 -2.86 16 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.09 -3.87 3.80 30.56 0.12 -3.75 16 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.03 1.52 6.43 -2.39 -0.02 1.50 16 24 H 0.05 2.80 6.07 -2.38 -0.01 2.79 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.78 4.81 -2.39 -0.01 1.77 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.42 6.43 -2.39 -0.02 1.41 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 2.31 4.81 -2.39 -0.01 2.30 16 Total: -1.00 -61.14 260.94 4.97 -56.17 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.03 Total: 7.54 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 1.68 Total: -56.14 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.24 Total: -54.50 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.14 4.97 -56.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259778225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.658 kcal (2) G-P(sol) polarization free energy of solvation -61.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds