Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86795 * 120.00378 * 2 1 4 4 H 1.48502 * 109.47248 * 240.00280 * 3 2 1 5 5 H 1.48503 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47289 * 119.99628 * 3 2 1 7 7 C 1.40327 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.41250 * 120.00056 * 359.97438 * 7 2 1 10 10 N 1.34019 * 120.72257 * 0.02972 * 9 7 2 11 11 C 1.31422 * 120.96730 * 179.97438 * 10 9 7 12 12 N 1.31981 * 122.55852 * 0.02562 * 11 10 9 13 13 C 1.32946 * 121.32402 * 359.65531 * 12 11 10 14 14 N 1.37849 * 120.57931 * 180.31421 * 13 12 11 15 15 C 1.41013 * 118.83504 * 0.61970 * 13 12 11 16 16 C 1.46952 * 121.12277 * 179.69365 * 15 13 12 17 17 O 1.21571 * 120.00148 * 269.72134 * 16 15 13 18 18 O 1.34836 * 120.00328 * 89.71941 * 16 15 13 19 19 H 0.97000 * 119.99580 * 359.97438 * 1 2 3 20 20 H 1.07997 * 118.71926 * 180.02562 * 11 10 9 21 21 H 0.97002 * 119.99857 * 180.30992 * 14 13 12 22 22 H 0.96997 * 120.00718 * 0.31212 * 14 13 12 23 23 H 0.96700 * 117.00401 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6176 0.0000 4 1 3.0933 1.6963 -1.2125 5 1 1.2746 2.7464 0.0006 6 1 3.0933 1.6963 1.2125 7 6 2.0071 -1.2153 -0.0005 8 1 3.0871 -1.2154 -0.0001 9 6 1.3008 -2.4385 -0.0005 10 7 -0.0393 -2.4554 -0.0006 11 6 -0.7014 -3.5906 -0.0011 12 7 -0.0982 -4.7646 -0.0011 13 6 1.2278 -4.8604 -0.0073 14 7 1.8417 -6.0946 -0.0137 15 6 1.9951 -3.6773 -0.0008 16 6 3.4639 -3.7246 -0.0005 17 8 4.0712 -3.7447 1.0524 18 8 4.1380 -3.7458 -1.1681 19 1 -0.4849 0.8401 0.0004 20 1 -1.7810 -3.5618 -0.0016 21 1 2.8099 -6.1546 -0.0137 22 1 1.3057 -6.9030 -0.0182 23 1 5.1032 -3.7773 -1.1173 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799798.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = -54.961484 kcal Electronic energy + Delta-G solvation = -13423.582912 eV Core-core repulsion = 10850.417535 eV Total energy + Delta-G solvation = -2573.165377 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 209.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.61663 -38.35424 -35.14952 -34.85633 -33.61349 -31.20248 -29.31634 -26.64612 -23.93892 -21.67496 -20.74615 -18.11321 -17.32501 -17.07767 -16.10592 -15.83481 -15.04870 -14.51423 -13.97439 -13.33663 -13.13225 -12.69821 -12.63976 -11.47119 -11.38116 -10.95752 -10.74968 -10.61158 -10.44481 -10.28350 -9.59346 -9.05056 -8.42979 -7.63072 -7.30306 -6.65649 -4.99424 2.43452 2.88106 2.97718 3.00355 3.06052 3.23793 3.77987 4.13247 4.31879 4.61645 5.69119 5.71742 6.13026 6.32610 6.60302 6.83795 6.95932 7.19914 7.37708 7.78742 7.96298 8.11864 8.35836 8.59128 8.76871 9.01508 9.95836 10.09161 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.013690 C = 0.010162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.295728 B = 2044.772709 C = 2754.585133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.402 4.402 8 H 0.085 0.915 9 C 0.317 3.683 10 N -0.533 5.533 11 C 0.333 3.667 12 N -0.667 5.667 13 C 0.478 3.522 14 N -0.853 5.853 15 C -0.404 4.404 16 C 0.572 3.428 17 O -0.534 6.534 18 O -0.519 6.519 19 H 0.281 0.719 20 H 0.166 0.834 21 H 0.396 0.604 22 H 0.397 0.603 23 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -2.486 -1.976 4.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.433 4.433 8 H 0.103 0.897 9 C 0.192 3.808 10 N -0.254 5.254 11 C 0.040 3.960 12 N -0.401 5.401 13 C 0.236 3.764 14 N -0.396 5.396 15 C -0.418 4.418 16 C 0.416 3.584 17 O -0.423 6.423 18 O -0.328 6.328 19 H 0.093 0.907 20 H 0.182 0.818 21 H 0.225 0.775 22 H 0.225 0.775 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.888 -2.164 -1.704 3.340 hybrid contribution 2.078 0.271 0.025 2.095 sum 3.966 -1.893 -1.680 4.705 Atomic orbital electron populations 1.69999 1.07431 1.28951 1.24808 1.26182 0.95059 1.01539 0.93240 0.86250 0.80192 0.79440 0.80380 1.18489 1.19699 1.18502 1.19679 0.94339 0.89282 1.40035 0.89731 1.18305 0.87813 0.89572 0.85148 1.69327 1.07208 1.26601 1.22312 1.24329 0.99708 0.83156 0.88786 1.67757 1.07288 1.30621 1.34484 1.17895 0.88906 0.84033 0.85575 1.41863 1.08554 1.05074 1.84150 1.19413 0.88273 0.95818 1.38316 1.20823 0.88714 0.68907 0.79988 1.90783 1.71040 1.47102 1.33340 1.84908 1.24842 1.85934 1.37140 0.90716 0.81767 0.77542 0.77478 0.75462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.52 11.52 55.57 0.64 -16.88 14 2 C 0.07 1.71 5.50 -17.31 -0.10 1.61 14 3 Si 0.91 18.02 29.56 -169.99 -5.03 12.99 14 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 14 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 14 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 14 7 C -0.40 -10.75 8.85 -37.65 -0.33 -11.08 14 8 H 0.08 2.19 6.98 -52.49 -0.37 1.82 14 9 C 0.32 8.74 6.61 -84.32 -0.56 8.18 14 10 N -0.53 -14.38 8.03 -12.33 -0.10 -14.48 14 11 C 0.33 8.02 12.25 -92.31 -1.13 6.89 14 12 N -0.67 -15.78 10.44 -13.67 -0.14 -15.92 14 13 C 0.48 11.14 7.84 -154.95 -1.21 9.92 14 14 N -0.85 -15.46 8.97 31.38 0.28 -15.18 14 15 C -0.40 -10.26 5.85 -103.87 -0.61 -10.87 14 16 C 0.57 13.12 5.36 34.26 0.18 13.30 14 17 O -0.53 -13.04 17.90 -19.32 -0.35 -13.39 14 18 O -0.52 -9.80 13.44 -40.87 -0.55 -10.35 14 19 H 0.28 6.35 8.29 -40.82 -0.34 6.01 14 20 H 0.17 3.35 8.06 -52.49 -0.42 2.93 14 21 H 0.40 6.56 7.78 -40.82 -0.32 6.25 14 22 H 0.40 6.14 8.95 -40.82 -0.37 5.77 14 23 H 0.39 5.06 9.11 45.56 0.42 5.48 14 LS Contribution 222.60 15.07 3.35 3.35 Total: -1.00 -31.92 222.60 -5.83 -37.75 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -0.19 Total: 14.15 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: -3.75 Total: 17.95 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.68 Total: -62.46 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.90 Total: -23.74 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.92 -5.83 -37.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799798.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.207 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds