Wall clock time and date at job start Mon Mar 30 2020 02:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33643 * 126.03859 * 2 1 4 4 N 1.31774 * 114.50132 * 179.78408 * 3 2 1 5 5 C 1.29024 * 117.12614 * 0.47397 * 4 3 2 6 6 C 1.50706 * 124.92041 * 179.80960 * 5 4 3 7 7 C 1.50697 * 115.54430 * 63.08700 * 6 5 4 8 8 H 1.08005 * 119.99935 * 215.69875 * 7 6 5 9 9 C 1.37875 * 120.00333 * 35.42956 * 7 6 5 10 10 N 1.31507 * 120.00044 * 8.16271 * 9 7 6 11 11 Si 1.86801 * 119.99903 * 188.17023 * 9 7 6 12 12 H 1.48499 * 109.47307 * 94.33633 * 11 9 7 13 13 H 1.48504 * 109.47127 * 214.33761 * 11 9 7 14 14 H 1.48504 * 109.47278 * 334.33708 * 11 9 7 15 15 C 1.52998 * 117.49814 * 208.75918 * 6 5 4 16 16 C 1.53000 * 117.50013 * 277.41919 * 6 5 4 17 17 S 1.70981 * 110.16582 * 359.54440 * 5 4 3 18 18 H 1.08994 * 109.47619 * 269.96051 * 1 2 3 19 19 H 1.09005 * 109.47166 * 29.96510 * 1 2 3 20 20 H 1.09001 * 109.46854 * 149.96068 * 1 2 3 21 21 H 1.07999 * 122.74525 * 0.03029 * 3 2 1 22 22 H 0.97004 * 120.00294 * 180.02562 * 10 9 7 23 23 H 1.09001 * 117.49608 * 215.00011 * 15 6 5 24 24 H 1.08991 * 117.50338 * 0.02562 * 15 6 5 25 25 H 1.09006 * 117.49746 * 359.97033 * 16 6 5 26 26 H 1.08992 * 117.50023 * 144.99365 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0045 5 6 3.9311 -0.4256 -0.0012 6 6 5.3532 -0.9245 -0.0015 7 6 6.1683 -0.5649 1.2139 8 1 7.2199 -0.3409 1.1119 9 6 5.5704 -0.5165 2.4553 10 7 4.3337 -0.9374 2.6064 11 14 6.5170 0.1472 3.9226 12 1 6.2127 1.5902 4.0965 13 1 6.1173 -0.5939 5.1459 14 1 7.9736 -0.0272 3.6920 15 6 5.6270 -2.2777 -0.6608 16 6 6.0799 -0.9863 -1.3465 17 16 2.5436 -1.4248 -0.0008 18 1 -0.3634 -0.0007 1.0276 19 1 -0.3634 0.8903 -0.5133 20 1 -0.3633 -0.8897 -0.5145 21 1 1.9024 2.0875 0.0005 22 1 3.9129 -0.9030 3.4798 23 1 6.3968 -2.9079 -0.2155 24 1 4.7787 -2.8070 -1.0947 25 1 5.5292 -0.6665 -2.2313 26 1 7.1475 -0.7669 -1.3523 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802886.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:59 Heat of formation + Delta-G solvation = 43.671666 kcal Electronic energy + Delta-G solvation = -11622.438452 eV Core-core repulsion = 9599.843343 eV Total energy + Delta-G solvation = -2022.595109 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.30139 -37.99521 -34.20693 -33.05671 -28.26515 -27.37255 -24.93004 -23.09701 -22.25027 -20.13752 -18.57117 -17.90251 -16.68057 -16.06618 -15.51734 -15.20819 -14.68678 -13.92534 -13.78301 -13.51863 -13.40742 -12.93541 -12.90620 -12.40131 -12.20816 -11.82534 -11.69099 -11.28047 -10.90690 -10.39490 -9.95261 -9.71768 -9.26264 -8.08348 -6.22934 0.23775 0.88345 1.29236 1.38892 1.41553 1.49744 2.30877 2.41436 3.00194 3.49398 3.73395 4.28757 4.33836 4.46241 4.51618 4.69854 4.79833 4.86399 4.97356 5.06550 5.15602 5.24670 5.46263 5.60596 5.74688 6.22098 6.72429 7.35322 7.37942 8.87566 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.031707 B = 0.014234 C = 0.011454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.864100 B = 1966.581871 C = 2443.932976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.260 4.260 3 C 0.012 3.988 4 N -0.528 5.528 5 C 0.168 3.832 6 C 0.064 3.936 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.030 3.970 10 N -0.891 5.891 11 Si 0.955 3.045 12 H -0.287 1.287 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.186 4.186 16 C -0.171 4.171 17 S 0.103 5.897 18 H 0.073 0.927 19 H 0.093 0.907 20 H 0.075 0.925 21 H 0.178 0.822 22 H 0.259 0.741 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -0.632 -4.638 7.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.382 4.382 3 C -0.138 4.138 4 N -0.242 5.242 5 C -0.110 4.110 6 C 0.060 3.940 7 C -0.540 4.540 8 H 0.081 0.919 9 C -0.172 4.172 10 N -0.528 5.528 11 Si 0.781 3.219 12 H -0.213 1.213 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.224 4.224 16 C -0.210 4.210 17 S 0.361 5.639 18 H 0.091 0.909 19 H 0.112 0.888 20 H 0.094 0.906 21 H 0.195 0.805 22 H 0.068 0.932 23 H 0.110 0.890 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.861 -1.345 -4.482 7.500 hybrid contribution 0.262 1.291 1.105 1.719 sum -5.599 -0.054 -3.377 6.539 Atomic orbital electron populations 1.20182 0.84695 1.04011 1.02923 1.26182 1.02539 0.94730 1.14724 1.21858 0.87243 1.00578 1.04168 1.66087 1.18176 1.20246 1.19677 1.26051 0.99129 0.90123 0.95664 1.17380 0.86672 0.96868 0.93057 1.20658 0.95084 1.47842 0.90412 0.91876 1.25641 0.95995 0.94380 1.01188 1.70117 1.13621 1.45062 1.23962 0.85595 0.79467 0.77933 0.78952 1.21295 1.20669 1.18719 1.23143 1.02970 0.91276 1.05044 1.22956 1.00490 1.02056 0.95517 1.83154 0.99403 1.13008 1.68352 0.90872 0.88795 0.90588 0.80464 0.93164 0.89038 0.89892 0.89738 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.54 10.42 71.24 0.74 -0.79 15 2 C -0.26 -9.84 6.60 24.64 0.16 -9.67 15 3 C 0.01 0.52 11.25 83.66 0.94 1.46 15 4 N -0.53 -26.62 10.54 -191.44 -2.02 -28.64 15 5 C 0.17 8.36 4.52 88.52 0.40 8.76 15 6 C 0.06 3.25 2.33 -53.67 -0.13 3.12 15 7 C -0.50 -27.73 9.05 25.60 0.23 -27.50 15 8 H 0.06 3.44 7.83 -2.91 -0.02 3.41 15 9 C 0.03 1.66 5.28 84.66 0.45 2.10 15 10 N -0.89 -50.27 11.35 21.45 0.24 -50.03 15 11 Si 0.95 44.24 29.54 68.60 2.03 46.26 15 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 15 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 14 H -0.26 -11.67 7.11 99.48 0.71 -10.97 15 15 C -0.19 -8.03 9.72 30.62 0.30 -7.73 15 16 C -0.17 -7.25 9.94 30.62 0.30 -6.95 15 17 S 0.10 4.41 22.03 -56.49 -1.24 3.17 15 18 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.09 1.97 8.14 -2.38 -0.02 1.95 15 20 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.18 6.22 8.06 -2.91 -0.02 6.20 15 22 H 0.26 14.21 8.31 -92.71 -0.77 13.44 15 23 H 0.09 3.86 8.14 -2.39 -0.02 3.85 15 24 H 0.08 3.31 7.66 -2.39 -0.02 3.30 15 25 H 0.08 3.34 8.14 -2.38 -0.02 3.32 15 26 H 0.10 3.82 8.14 -2.39 -0.02 3.80 15 Total: -1.00 -62.95 244.59 3.58 -59.37 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.17 Total: 7.06 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 3.40 Total: -37.19 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.77 Total: -78.67 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.24 Total: 3.17 kcal Total: -62.95 3.58 -59.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802886.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.042 kcal (2) G-P(sol) polarization free energy of solvation -62.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds