Wall clock time and date at job start Mon Mar 30 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.40099 * 119.86651 * 44.15926 * 3 2 1 5 5 C 1.36470 * 120.13389 * 179.71442 * 4 3 2 6 6 F 1.35102 * 120.06791 * 180.27336 * 5 4 3 7 7 C 1.41215 * 119.86120 * 0.56133 * 5 4 3 8 8 C 1.40796 * 120.13061 * 179.69561 * 7 5 4 9 9 H 1.07997 * 120.00053 * 216.59802 * 8 7 5 10 10 C 1.40202 * 119.99806 * 36.59833 * 8 7 5 11 11 N 1.30697 * 120.00454 * 19.97947 * 10 8 7 12 12 Si 1.86802 * 119.99637 * 199.97349 * 10 8 7 13 13 H 1.48497 * 109.47352 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47074 * 120.00401 * 12 10 8 15 15 H 1.48499 * 109.47246 * 240.00004 * 12 10 8 16 16 C 1.41209 * 119.74000 * 359.71552 * 7 5 4 17 17 F 1.35095 * 120.07111 * 179.97438 * 16 7 5 18 18 C 1.36475 * 119.85757 * 359.97438 * 16 7 5 19 19 H 1.07995 * 119.92855 * 359.97438 * 4 3 2 20 20 H 0.96993 * 120.00196 * 179.97438 * 11 10 8 21 21 H 1.07998 * 119.93198 * 179.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2661 -0.8706 -0.8464 5 6 4.6308 -0.8705 -0.8550 6 9 5.3026 -1.7074 -1.6758 7 6 5.3392 0.0019 0.0000 8 6 6.7472 0.0022 0.0004 9 1 7.2869 0.1483 0.9243 10 6 7.4485 -0.1871 -1.1988 11 7 6.8543 0.0235 -2.3437 12 14 9.2323 -0.7401 -1.1602 13 1 9.6681 -0.9083 0.2494 14 1 9.3650 -2.0341 -1.8766 15 1 10.0819 0.2818 -1.8228 16 6 4.6300 0.8736 0.8551 17 9 5.3010 1.7106 1.6762 18 6 3.2653 0.8688 0.8501 19 1 2.7231 -1.5407 -1.4963 20 1 7.3396 -0.1071 -3.1733 21 1 2.7217 1.5347 1.5039 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963507.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:31 Heat of formation + Delta-G solvation = -61.835884 kcal Electronic energy + Delta-G solvation = -12820.446596 eV Core-core repulsion = 10103.602856 eV Total energy + Delta-G solvation = -2716.843740 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 209.035 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.32427 -49.12234 -39.42537 -37.21680 -35.74055 -32.19085 -31.02692 -27.95332 -24.12554 -23.15786 -19.99993 -19.64405 -17.85938 -17.08149 -16.86221 -16.30866 -16.10430 -15.99987 -15.60119 -14.82980 -14.57283 -14.22507 -14.11391 -13.67357 -13.39881 -13.04456 -12.84692 -12.39606 -12.33205 -11.99343 -11.78021 -11.10249 -9.56366 -9.40249 -8.93803 -6.63965 0.09066 0.64024 1.37211 1.42215 1.56287 1.81396 2.01812 2.15973 2.68986 3.09199 3.23055 3.75733 4.11113 4.28975 4.34943 4.80825 4.96378 5.09585 5.35168 5.49983 5.72639 5.84608 6.18241 6.48916 6.57570 6.70318 8.05213 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.045741 B = 0.011071 C = 0.009279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.996292 B = 2528.424722 C = 3016.696004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.305 3.695 3 C -0.135 4.135 4 C -0.072 4.072 5 C 0.023 3.977 6 F -0.144 7.144 7 C 0.051 3.949 8 C -0.456 4.456 9 H 0.097 0.903 10 C 0.037 3.963 11 N -0.778 5.778 12 Si 0.986 3.014 13 H -0.252 1.252 14 H -0.263 1.263 15 H -0.260 1.260 16 C -0.015 4.015 17 F -0.153 7.153 18 C -0.060 4.060 19 H 0.137 0.863 20 H 0.302 0.698 21 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -1.108 1.139 3.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.006 4.006 3 C -0.141 4.141 4 C -0.093 4.093 5 C 0.003 3.997 6 F -0.123 7.123 7 C 0.046 3.954 8 C -0.482 4.482 9 H 0.115 0.885 10 C -0.185 4.185 11 N -0.399 5.399 12 Si 0.805 3.195 13 H -0.175 1.175 14 H -0.187 1.187 15 H -0.185 1.185 16 C -0.036 4.036 17 F -0.132 7.132 18 C -0.081 4.081 19 H 0.155 0.845 20 H 0.113 0.887 21 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.091 -1.086 0.868 1.768 hybrid contribution 1.318 -0.110 -0.231 1.342 sum 2.409 -1.196 0.637 2.764 Atomic orbital electron populations 1.81146 1.12620 1.11701 1.11945 1.25471 0.92101 0.91559 0.91502 1.14665 0.83340 1.07702 1.08402 1.20453 0.91838 0.98640 0.98391 1.16996 0.89001 0.95597 0.98143 1.91338 1.81173 1.69014 1.70760 1.18014 0.95058 0.90781 0.91519 1.19927 0.91302 1.40806 0.96193 0.88533 1.26841 1.06110 0.91949 0.93593 1.69685 1.41358 1.28724 1.00139 0.85065 0.75025 0.79013 0.80389 1.17533 1.18750 1.18465 1.17003 0.89392 0.96520 1.00676 1.91328 1.81260 1.69862 1.70713 1.20429 0.91622 0.98095 0.97961 0.84473 0.88680 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -19.17 18.54 19.00 0.35 -18.82 14 2 C 0.30 11.23 15.31 88.33 1.35 12.58 14 3 C -0.14 -5.12 5.76 -21.13 -0.12 -5.24 14 4 C -0.07 -2.85 9.65 22.31 0.22 -2.63 14 5 C 0.02 1.07 6.63 22.59 0.15 1.22 14 6 F -0.14 -6.89 14.23 44.97 0.64 -6.25 14 7 C 0.05 2.46 5.41 -21.19 -0.11 2.34 14 8 C -0.46 -21.96 8.56 23.37 0.20 -21.76 14 9 H 0.10 4.51 7.92 -2.91 -0.02 4.48 14 10 C 0.04 1.68 4.50 85.34 0.38 2.06 14 11 N -0.78 -36.69 11.11 21.87 0.24 -36.45 14 12 Si 0.99 34.25 29.61 68.60 2.03 36.28 14 13 H -0.25 -8.54 7.11 99.48 0.71 -7.84 14 14 H -0.26 -8.94 7.11 99.48 0.71 -8.23 14 15 H -0.26 -8.58 7.11 99.48 0.71 -7.87 14 16 C -0.02 -0.67 7.25 22.59 0.16 -0.51 14 17 F -0.15 -6.65 16.81 44.97 0.76 -5.89 14 18 C -0.06 -2.27 9.65 22.31 0.22 -2.05 14 19 H 0.14 4.80 8.06 -2.91 -0.02 4.78 14 20 H 0.30 12.75 8.29 -92.71 -0.77 11.98 14 21 H 0.15 4.65 8.06 -2.91 -0.02 4.63 14 Total: -1.00 -50.93 216.66 7.75 -43.18 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.28 Total: 1.93 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 2.44 Total: -13.99 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.60 Total: -55.27 kcal Atomic # 9 Polarization: -13.54 SS G_CDS: 1.40 Total: -12.14 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 2.03 Total: 36.28 kcal Total: -50.93 7.75 -43.18 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963507.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.651 kcal (2) G-P(sol) polarization free energy of solvation -50.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds