Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48497 * 109.46914 * 269.99482 * 3 2 1 5 5 H 1.48501 * 109.47084 * 29.99827 * 3 2 1 6 6 H 1.48504 * 109.47193 * 149.99870 * 3 2 1 7 7 C 1.37875 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00160 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00332 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.62898 * 59.75040 * 9 7 2 11 11 C 1.53146 * 109.55445 * 179.97438 * 9 7 2 12 12 C 1.53032 * 109.44632 * 190.23622 * 11 9 7 13 13 C 1.52121 * 108.72952 * 308.77198 * 12 11 9 14 14 N 1.32524 * 124.20290 * 197.56088 * 13 12 11 15 15 C 1.28669 * 117.88078 * 179.97438 * 14 13 12 16 16 S 1.70915 * 110.14099 * 0.02562 * 15 14 13 17 17 C 1.34615 * 122.64295 * 17.54370 * 13 12 11 18 18 C 1.50995 * 125.22180 * 0.03978 * 17 13 12 19 19 H 0.96997 * 119.99853 * 0.02562 * 1 2 3 20 20 H 1.09005 * 109.47107 * 310.22912 * 11 9 7 21 21 H 1.08999 * 109.47553 * 70.23889 * 11 9 7 22 22 H 1.09003 * 109.59470 * 68.55417 * 12 11 9 23 23 H 1.09004 * 109.58755 * 188.84548 * 12 11 9 24 24 H 1.07994 * 124.92732 * 180.02562 * 15 14 13 25 25 H 1.09003 * 109.61534 * 256.32813 * 18 17 13 26 26 H 1.09002 * 109.61828 * 135.79682 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6204 -2.5579 -0.8866 11 6 2.2447 -3.6646 0.0005 12 6 1.4946 -4.9736 -0.2559 13 6 0.3264 -5.0653 0.7142 14 7 -0.3204 -6.1867 0.9975 15 6 -1.2925 -6.1247 1.8382 16 16 -1.4928 -4.5192 2.3888 17 6 -0.1536 -3.9957 1.3759 18 6 0.3784 -2.5876 1.2574 19 1 -0.4850 0.8400 -0.0004 20 1 2.9855 -3.5105 -0.7841 21 1 2.7448 -3.7157 0.9676 22 1 1.1213 -4.9865 -1.2800 23 1 2.1679 -5.8168 -0.1017 24 1 -1.8944 -6.9652 2.1505 25 1 0.9769 -2.3475 2.1362 26 1 -0.4533 -1.8878 1.1756 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966166.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = 22.588307 kcal Electronic energy + Delta-G solvation = -11579.220134 eV Core-core repulsion = 9555.710783 eV Total energy + Delta-G solvation = -2023.509352 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.42826 -35.86186 -32.45856 -29.81998 -28.91875 -25.29963 -23.50204 -22.42618 -20.24481 -17.65755 -17.45365 -16.27575 -14.77264 -14.51044 -14.31015 -13.56157 -13.05681 -12.77932 -12.28540 -11.84407 -11.41865 -11.19232 -11.09887 -10.88467 -10.56972 -10.39969 -9.67048 -9.31596 -8.97736 -8.94676 -8.65303 -8.42643 -7.95453 -6.08384 -4.13901 1.34788 1.94078 2.34140 3.27171 3.34340 3.34879 3.37311 4.37901 4.65052 5.23468 5.51462 5.78006 5.90281 6.00020 6.16539 6.36084 6.57565 6.66267 6.77082 6.94101 6.99582 7.23704 7.59648 7.79423 7.95418 8.24960 8.34155 8.89902 9.51476 10.98846 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.052036 B = 0.009679 C = 0.008460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.958989 B = 2892.066280 C = 3308.906376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.055 3.945 10 H 0.032 0.968 11 C -0.112 4.112 12 C -0.032 4.032 13 C 0.030 3.970 14 N -0.468 5.468 15 C -0.008 4.008 16 S 0.069 5.931 17 C -0.165 4.165 18 C -0.039 4.039 19 H 0.262 0.738 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.189 0.811 25 H 0.064 0.936 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -7.103 3.396 8.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.035 3.965 10 H 0.050 0.950 11 C -0.150 4.150 12 C -0.072 4.072 13 C -0.099 4.099 14 N -0.182 5.182 15 C -0.306 4.306 16 S 0.323 5.677 17 C -0.286 4.286 18 C -0.079 4.079 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.206 0.794 25 H 0.082 0.918 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.301 -7.086 3.893 8.406 hybrid contribution 0.832 0.800 -0.434 1.233 sum -1.469 -6.286 3.459 7.324 Atomic orbital electron populations 1.69880 1.05956 1.26732 1.50354 1.25010 0.94873 0.99255 0.94840 0.86573 0.79874 0.83294 0.78170 1.20631 1.21230 1.19843 1.21178 0.93060 0.90193 1.50816 0.92220 1.18737 0.92422 0.92194 0.93139 0.94974 1.21710 0.98745 0.93708 1.00828 1.20364 0.91973 0.99151 0.95747 1.20995 1.00671 0.86046 1.02192 1.65813 1.07106 1.30933 1.14320 1.27811 1.01134 1.00411 1.01276 1.83816 1.33427 1.05544 1.44930 1.26978 0.98209 1.03463 0.99957 1.20662 1.01077 0.85589 1.00580 0.92817 0.91927 0.93010 0.90991 0.91546 0.79424 0.91755 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 11.52 55.43 0.64 -23.98 15 2 C 0.06 1.65 5.31 -17.82 -0.09 1.56 15 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.51 -13.53 8.52 -34.44 -0.29 -13.82 15 8 H 0.06 1.54 7.75 -52.48 -0.41 1.14 15 9 C 0.06 1.34 2.10 -91.55 -0.19 1.14 15 10 H 0.03 0.85 8.11 -51.93 -0.42 0.43 15 11 C -0.11 -2.29 5.12 -26.64 -0.14 -2.42 15 12 C -0.03 -0.61 6.29 -27.16 -0.17 -0.78 15 13 C 0.03 0.60 6.78 -82.87 -0.56 0.04 15 14 N -0.47 -8.92 10.51 -11.16 -0.12 -9.04 15 15 C -0.01 -0.12 12.22 51.44 0.63 0.50 15 16 S 0.07 1.17 23.21 -107.50 -2.50 -1.32 15 17 C -0.17 -3.43 6.39 -35.45 -0.23 -3.66 15 18 C -0.04 -0.90 5.17 -27.60 -0.14 -1.04 15 19 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 20 H 0.06 1.22 8.11 -51.93 -0.42 0.79 15 21 H 0.05 1.04 8.10 -51.93 -0.42 0.62 15 22 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.19 2.22 8.06 -52.49 -0.42 1.79 15 25 H 0.06 1.50 8.11 -51.93 -0.42 1.08 15 26 H 0.10 2.62 6.51 -51.93 -0.34 2.28 15 LS Contribution 233.34 15.07 3.52 3.52 Total: -1.00 -27.96 233.34 -7.50 -35.46 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -2.83 Total: -1.75 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.19 Total: -18.47 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.52 Total: -33.02 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.50 Total: -1.32 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.96 -7.50 -35.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966166.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.052 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds