Wall clock time and date at job start Mon Mar 30 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47057 * 179.97438 * 9 7 2 11 11 H 1.09004 * 115.54164 * 29.38743 * 10 9 7 12 12 C 1.52841 * 117.48993 * 243.75761 * 10 9 7 13 13 C 1.53549 * 60.21511 * 252.47477 * 12 10 9 14 14 C 1.54436 * 115.72741 * 105.64873 * 13 12 10 15 15 C 1.54059 * 112.04134 * 105.75805 * 14 13 12 16 16 C 1.50725 * 110.57728 * 319.49017 * 15 14 13 17 17 C 1.52904 * 108.71503 * 94.71042 * 16 15 14 18 18 C 1.46463 * 114.10494 * 274.25164 * 17 16 15 19 19 C 1.51141 * 117.70234 * 252.89878 * 13 12 10 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.09002 * 117.47779 * 0.02867 * 12 10 9 24 24 H 1.09001 * 117.47802 * 144.92107 * 12 10 9 25 25 H 1.08998 * 108.96985 * 226.41636 * 14 13 12 26 26 H 1.08997 * 108.97150 * 345.10044 * 14 13 12 27 27 H 1.09001 * 109.26038 * 199.20213 * 15 14 13 28 28 H 1.09005 * 109.25718 * 79.77053 * 15 14 13 29 29 H 1.08998 * 109.59677 * 334.93956 * 16 15 14 30 30 H 1.09008 * 109.59720 * 214.47839 * 16 15 14 31 31 H 1.09000 * 108.55610 * 153.04895 * 17 16 15 32 32 H 1.09004 * 108.54967 * 35.44659 * 17 16 15 33 33 H 1.09002 * 109.25341 * 302.48140 * 18 17 16 34 34 H 1.09004 * 109.21628 * 183.04019 * 18 17 16 35 35 H 1.09004 * 109.40064 * 64.40414 * 19 13 12 36 36 H 1.08997 * 109.39324 * 184.12988 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 1 3.2025 -3.4622 0.4832 12 6 2.2472 -4.5884 -1.2142 13 6 1.6740 -5.0838 0.1214 14 6 0.1343 -5.1748 0.1976 15 6 -0.3626 -6.6317 0.1342 16 6 0.4319 -7.4188 -0.8763 17 6 1.5701 -8.1387 -0.1523 18 6 2.7776 -7.3276 0.0190 19 6 2.4834 -6.0939 0.9018 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 1.5403 -4.3693 -2.0145 24 1 3.2057 -4.9979 -1.5331 25 1 -0.2013 -4.7265 1.1327 26 1 -0.2953 -4.6175 -0.6348 27 1 -1.4149 -6.6406 -0.1500 28 1 -0.2522 -7.0922 1.1159 29 1 0.8446 -6.7420 -1.6244 30 1 -0.2149 -8.1512 -1.3597 31 1 1.8303 -9.0332 -0.7182 32 1 1.2159 -8.4457 0.8318 33 1 3.1288 -6.9951 -0.9578 34 1 3.5515 -7.9319 0.4925 35 1 3.4238 -5.6403 1.2149 36 1 1.9219 -6.4047 1.7828 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:14 Heat of formation + Delta-G solvation = -33.216985 kcal Electronic energy + Delta-G solvation = -14105.463327 eV Core-core repulsion = 11973.873305 eV Total energy + Delta-G solvation = -2131.590022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74429 -36.99307 -35.10876 -33.38036 -30.70826 -28.91058 -25.97444 -25.09469 -23.85303 -21.99933 -20.72209 -19.04824 -18.83650 -16.65576 -16.50982 -15.66163 -15.28605 -15.09501 -14.62837 -14.56993 -14.05138 -13.96828 -13.56914 -13.23067 -12.94710 -12.65808 -12.53429 -12.12479 -11.95363 -11.79486 -11.54019 -11.33325 -11.31785 -11.12578 -10.93477 -10.72556 -10.37257 -10.05431 -8.70707 -6.40759 1.49504 1.59443 1.77441 2.54387 2.86317 3.14445 3.71351 3.74236 3.92812 4.04985 4.14850 4.22425 4.31344 4.36992 4.46021 4.64319 4.68559 4.77510 4.90139 4.92495 5.02709 5.08826 5.13667 5.16448 5.23753 5.32821 5.33430 5.39607 5.44875 5.46671 5.49563 5.57468 5.66617 6.00915 6.16051 6.56987 7.40727 8.69082 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.059454 B = 0.007150 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.839185 B = 3915.244226 C = 4178.951447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.041 4.041 3 Si 1.121 2.879 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.616 4.616 8 H 0.048 0.952 9 C 0.049 3.951 10 C -0.146 4.146 11 H 0.083 0.917 12 C -0.161 4.161 13 C -0.102 4.102 14 C -0.080 4.080 15 C -0.108 4.108 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.075 4.075 20 H 0.254 0.746 21 H -0.015 1.015 22 H -0.015 1.015 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -16.014 -0.219 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.942 3.058 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.653 4.653 8 H 0.066 0.934 9 C 0.012 3.988 10 C -0.165 4.165 11 H 0.101 0.899 12 C -0.198 4.198 13 C -0.102 4.102 14 C -0.118 4.118 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.113 4.113 20 H 0.063 0.937 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.092 0.908 24 H 0.122 0.878 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.617 -14.402 -0.214 14.851 hybrid contribution -0.176 -1.147 -0.052 1.162 sum 3.441 -15.549 -0.266 15.927 Atomic orbital electron populations 1.70894 1.07931 1.29713 1.49078 1.27508 0.96633 1.06940 0.92727 0.82895 0.74158 0.70878 0.77875 1.19681 1.19398 1.20594 1.22551 0.94578 0.93508 1.54699 0.93411 1.18604 0.93723 0.93156 0.93298 1.22598 0.99809 0.90852 1.03193 0.89866 1.23161 1.02220 1.03421 0.90970 1.21738 0.94553 0.94686 0.99216 1.21511 0.92520 0.97708 1.00021 1.21398 0.99327 0.93468 1.00307 1.21168 0.97426 0.98905 0.98033 1.20386 0.95173 0.98558 1.00884 1.20608 0.98468 0.95680 0.99889 1.20987 0.98118 0.94540 0.97645 0.93704 0.99658 0.99718 0.90819 0.87847 0.93983 0.94495 0.91900 0.91157 0.92600 0.90934 0.91320 0.91873 0.92325 0.90486 0.92485 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.44 13.65 21.45 0.29 -60.14 16 2 C -0.04 -2.50 5.46 84.65 0.46 -2.03 16 3 Si 1.12 52.07 29.90 68.60 2.05 54.12 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.62 -37.08 9.08 25.60 0.23 -36.85 16 8 H 0.05 2.81 7.68 -2.91 -0.02 2.79 16 9 C 0.05 2.70 3.43 29.85 0.10 2.80 16 10 C -0.15 -6.46 5.32 -10.61 -0.06 -6.52 16 11 H 0.08 3.74 7.87 -2.38 -0.02 3.72 16 12 C -0.16 -5.86 7.84 30.73 0.24 -5.62 16 13 C -0.10 -3.50 1.39 -51.88 -0.07 -3.58 16 14 C -0.08 -2.75 4.51 31.44 0.14 -2.61 16 15 C -0.11 -2.74 5.57 30.21 0.17 -2.57 16 16 C -0.12 -2.64 5.55 29.82 0.17 -2.48 16 17 C -0.11 -2.18 5.14 28.54 0.15 -2.03 16 18 C -0.11 -2.34 5.47 29.09 0.16 -2.18 16 19 C -0.08 -2.07 5.24 30.51 0.16 -1.91 16 20 H 0.25 16.60 7.22 -92.71 -0.67 15.93 16 21 H -0.01 -0.87 7.70 -2.39 -0.02 -0.89 16 22 H -0.02 -0.91 7.41 -2.39 -0.02 -0.92 16 23 H 0.07 2.84 7.89 -2.39 -0.02 2.82 16 24 H 0.10 3.26 7.33 -2.39 -0.02 3.24 16 25 H 0.04 1.57 7.96 -2.39 -0.02 1.55 16 26 H 0.04 1.42 7.28 -2.39 -0.02 1.40 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.62 7.12 -2.38 -0.02 1.61 16 29 H 0.06 1.45 6.35 -2.39 -0.02 1.43 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.15 7.27 -2.38 -0.02 1.13 16 33 H 0.06 1.32 6.66 -2.39 -0.02 1.31 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.06 1.59 7.83 -2.38 -0.02 1.58 16 36 H 0.07 1.80 7.86 -2.39 -0.02 1.78 16 Total: -1.00 -67.18 272.86 5.32 -61.86 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.12 Total: 9.73 kcal Atomic # 6 Polarization: -67.42 SS G_CDS: 1.85 Total: -65.57 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.29 Total: -60.14 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.05 Total: 54.12 kcal Total: -67.18 5.32 -61.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.645 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds