Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40265 * 119.90632 * 321.66840 * 3 2 1 5 5 C 1.36046 * 120.31730 * 179.97438 * 4 3 2 6 6 C 1.41008 * 120.11109 * 0.02562 * 5 4 3 7 7 C 1.40912 * 120.09903 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00223 * 206.01232 * 7 6 5 9 9 C 1.40173 * 120.00097 * 25.72657 * 7 6 5 10 10 N 1.30698 * 119.99939 * 16.69590 * 9 7 6 11 11 Si 1.86803 * 120.00236 * 196.69525 * 9 7 6 12 12 H 1.48494 * 109.47327 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47224 * 120.00292 * 11 9 7 14 14 H 1.48501 * 109.47021 * 240.00171 * 11 9 7 15 15 C 1.41092 * 119.80740 * 0.26598 * 6 5 4 16 16 F 1.35099 * 120.15717 * 179.70505 * 15 6 5 17 17 C 1.37851 * 119.69083 * 359.45020 * 15 6 5 18 18 F 1.35099 * 120.06197 * 180.27092 * 17 15 6 19 19 H 1.08003 * 119.84039 * 359.96179 * 4 3 2 20 20 H 1.07993 * 119.94255 * 179.97438 * 5 4 3 21 21 H 0.96997 * 120.00562 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 -0.9528 0.7541 5 6 4.6282 -0.9602 0.7597 6 6 5.3439 -0.0070 0.0064 7 6 6.7530 -0.0152 0.0120 8 1 7.2991 0.8954 -0.1850 9 6 7.4459 -1.2041 0.2791 10 7 6.8274 -2.3527 0.2006 11 14 9.2534 -1.1467 0.7473 12 1 9.7153 0.2644 0.7665 13 1 9.4351 -1.7449 2.0944 14 1 10.0467 -1.9142 -0.2461 15 6 4.6451 0.9582 -0.7491 16 9 5.3237 1.8784 -1.4687 17 6 3.2666 0.9546 -0.7537 18 9 2.5898 1.8719 -1.4787 19 1 2.7240 -1.6845 1.3332 20 1 5.1608 -1.6968 1.3428 21 1 7.3069 -3.1755 0.3851 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259984761.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = -58.527166 kcal Electronic energy + Delta-G solvation = -12696.173478 eV Core-core repulsion = 9979.473214 eV Total energy + Delta-G solvation = -2716.700264 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 209.035 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.38563 -47.29221 -37.78348 -35.63818 -34.09150 -30.42625 -29.15214 -26.44003 -22.42282 -21.44711 -18.24198 -18.12732 -16.28492 -15.86126 -15.54023 -15.21422 -14.55336 -13.81999 -13.70237 -13.24749 -12.81654 -12.78921 -12.44155 -12.05771 -12.01859 -11.53851 -11.14793 -10.87831 -10.63969 -10.42069 -10.15673 -9.65630 -7.94456 -7.74663 -7.37347 -4.97685 1.76387 2.33936 2.75760 2.81293 2.88003 3.49438 3.53268 3.67532 4.28926 4.83604 4.99444 5.08257 5.73264 5.88504 6.25430 6.43319 6.57587 6.85282 7.05883 7.32868 7.50823 7.56117 7.99565 8.12873 8.23752 8.40174 9.52035 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.047790 B = 0.010116 C = 0.008534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.750770 B = 2767.256437 C = 3280.371126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.289 3.711 3 C -0.204 4.204 4 C -0.034 4.034 5 C -0.160 4.160 6 C 0.116 3.884 7 C -0.408 4.408 8 H 0.097 0.903 9 C 0.071 3.929 10 N -0.752 5.752 11 Si 0.924 3.076 12 H -0.253 1.253 13 H -0.265 1.265 14 H -0.267 1.267 15 C -0.064 4.064 16 F -0.148 7.148 17 C 0.149 3.851 18 F -0.146 7.146 19 H 0.113 0.887 20 H 0.137 0.863 21 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -0.492 1.988 4.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.022 4.022 3 C -0.211 4.211 4 C -0.055 4.055 5 C -0.179 4.179 6 C 0.111 3.889 7 C -0.434 4.434 8 H 0.115 0.885 9 C -0.154 4.154 10 N -0.374 5.374 11 Si 0.746 3.254 12 H -0.176 1.176 13 H -0.189 1.189 14 H -0.192 1.192 15 C -0.086 4.086 16 F -0.127 7.127 17 C 0.126 3.874 18 F -0.125 7.125 19 H 0.131 0.869 20 H 0.154 0.846 21 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.674 -0.695 1.943 3.377 hybrid contribution 1.159 0.197 -0.170 1.188 sum 3.833 -0.498 1.773 4.253 Atomic orbital electron populations 1.81072 1.12344 1.10895 1.12345 1.25619 0.92497 0.92168 0.91934 1.15121 0.83656 1.06745 1.15538 1.20236 0.94295 0.95020 0.95913 1.20827 0.91979 1.02463 1.02645 1.17609 0.93943 0.89149 0.88242 1.19936 0.91144 0.96462 1.35846 0.88466 1.26212 1.02709 0.94425 0.92034 1.69720 1.39640 0.99372 1.28618 0.85965 0.79521 0.80588 0.79317 1.17647 1.18943 1.19225 1.17409 0.86729 0.98888 1.05530 1.91326 1.80043 1.64671 1.76659 1.17332 0.88172 0.88447 0.93408 1.91405 1.80517 1.64759 1.75816 0.86917 0.84553 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.83 18.54 41.84 0.78 -10.05 14 2 C 0.29 6.21 14.95 -22.47 -0.34 5.87 14 3 C -0.20 -4.35 5.77 -106.47 -0.61 -4.97 14 4 C -0.03 -0.68 9.67 -39.61 -0.38 -1.06 14 5 C -0.16 -3.42 8.60 -39.32 -0.34 -3.76 14 6 C 0.12 2.67 5.57 -106.75 -0.59 2.07 14 7 C -0.41 -9.19 8.76 -37.84 -0.33 -9.52 14 8 H 0.10 2.15 7.74 -52.49 -0.41 1.74 14 9 C 0.07 1.45 5.15 -17.31 -0.09 1.36 14 10 N -0.75 -15.80 10.95 55.56 0.61 -15.20 14 11 Si 0.92 15.36 29.59 -169.99 -5.03 10.33 14 12 H -0.25 -4.25 7.11 56.52 0.40 -3.85 14 13 H -0.26 -4.30 7.11 56.52 0.40 -3.90 14 14 H -0.27 -4.42 7.11 56.52 0.40 -4.02 14 15 C -0.06 -1.50 7.30 -38.64 -0.28 -1.78 14 16 F -0.15 -3.47 16.62 2.25 0.04 -3.43 14 17 C 0.15 3.36 7.27 -38.98 -0.28 3.08 14 18 F -0.15 -3.29 16.71 2.25 0.04 -3.25 14 19 H 0.11 1.96 8.06 -52.48 -0.42 1.53 14 20 H 0.14 2.88 6.18 -52.49 -0.32 2.56 14 21 H 0.29 5.46 8.29 -40.82 -0.34 5.12 14 LS Contribution 217.05 15.07 3.27 3.27 Total: -1.00 -24.00 217.05 -3.84 -27.84 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -0.29 Total: -0.81 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.25 Total: -8.70 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 1.38 Total: -25.25 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.08 Total: -6.68 kcal Atomic # 14 Polarization: 15.36 SS G_CDS: -5.03 Total: 10.33 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -24.00 -3.84 -27.84 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984761.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.692 kcal (2) G-P(sol) polarization free energy of solvation -23.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds