Wall clock time and date at job start Mon Mar 30 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 115.55004 * 2 1 4 4 C 1.52996 * 109.47252 * 40.46202 * 3 2 1 5 5 C 1.52999 * 109.47252 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47320 * 60.00176 * 5 4 3 7 7 C 1.53005 * 109.46916 * 300.00027 * 6 5 4 8 8 C 1.52999 * 109.47148 * 59.99868 * 7 6 5 9 9 C 1.53003 * 117.49546 * 214.33261 * 2 1 3 10 10 C 1.53003 * 60.03033 * 252.47453 * 9 2 1 11 11 H 1.09000 * 117.49463 * 107.50080 * 10 9 2 12 12 C 1.50700 * 117.50156 * 252.52292 * 10 9 2 13 13 H 1.08003 * 119.99633 * 54.82584 * 12 10 9 14 14 C 1.37869 * 119.99957 * 234.82673 * 12 10 9 15 15 N 1.31510 * 120.00238 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00067 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46955 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47433 * 119.99932 * 16 14 12 19 19 H 1.48503 * 109.46977 * 240.00395 * 16 14 12 20 20 H 1.09003 * 109.47400 * 180.08140 * 1 2 3 21 21 H 1.09000 * 109.47086 * 300.08789 * 1 2 3 22 22 H 1.09005 * 109.47184 * 60.08508 * 1 2 3 23 23 H 1.08996 * 109.46802 * 160.46383 * 3 2 1 24 24 H 1.09003 * 109.47128 * 300.00149 * 4 3 2 25 25 H 1.09003 * 109.47131 * 59.99740 * 4 3 2 26 26 H 1.09002 * 109.46444 * 299.99987 * 5 4 3 27 27 H 1.09005 * 109.46964 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.47322 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47420 * 59.99519 * 6 5 4 30 30 H 1.08996 * 109.47368 * 300.00093 * 7 6 5 31 31 H 1.09003 * 109.47232 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47576 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.47176 * 59.99940 * 8 7 6 34 34 H 1.08994 * 117.50201 * 359.97438 * 9 2 1 35 35 H 1.09003 * 117.49642 * 144.97843 * 9 2 1 36 36 H 0.97001 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.4197 2.3139 0.9361 5 6 2.0800 3.6940 0.9366 6 6 2.0641 4.2675 -0.4818 7 6 2.8344 3.3340 -1.4179 8 6 2.1741 1.9538 -1.4184 9 6 2.2364 -1.1208 -0.7655 10 6 2.2376 -1.1216 0.7646 11 1 1.6130 -1.8596 1.2679 12 6 3.5307 -0.7815 1.4596 13 1 4.0395 0.1434 1.2311 14 6 4.0642 -1.6509 2.3872 15 7 3.4449 -2.7773 2.6650 16 14 5.6675 -1.2297 3.2483 17 1 6.1609 0.0835 2.7609 18 1 5.4389 -1.1602 4.7139 19 1 6.6777 -2.2776 2.9538 20 1 -0.3634 -1.0277 0.0015 21 1 -0.3633 0.5152 0.8892 22 1 -0.3634 0.5125 -0.8908 23 1 3.2203 1.2904 0.3436 24 1 0.3892 2.4038 0.5924 25 1 1.4313 1.9055 1.9467 26 1 3.1103 3.6037 1.2805 27 1 1.5315 4.3590 1.6038 28 1 2.5341 5.2509 -0.4813 29 1 1.0338 4.3577 -0.8258 30 1 3.8647 3.2437 -1.0740 31 1 2.8235 3.7428 -2.4283 32 1 2.7225 1.2889 -2.0856 33 1 1.1437 2.0441 -1.7623 34 1 1.6112 -1.8583 -1.2686 35 1 3.1711 -0.8746 -1.2693 36 1 3.8204 -3.3892 3.3173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:50 Heat of formation + Delta-G solvation = -16.367374 kcal Electronic energy + Delta-G solvation = -14316.066114 eV Core-core repulsion = 12185.206747 eV Total energy + Delta-G solvation = -2130.859368 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.77356 -35.88625 -32.35222 -30.30819 -29.74613 -27.66143 -25.12587 -22.45459 -22.07471 -20.20471 -19.35613 -17.70759 -16.31342 -14.81641 -14.59957 -13.84179 -13.74124 -13.62573 -13.20915 -12.65151 -12.31075 -11.76546 -11.65748 -11.62702 -11.10596 -11.02857 -10.94427 -10.82155 -10.60448 -10.43021 -10.21583 -9.75198 -9.62975 -9.59055 -9.09570 -8.82137 -8.23916 -7.97679 -6.05910 -4.01243 3.27962 3.36434 3.40224 4.40660 4.96898 5.12901 5.22527 5.24329 5.51555 5.72481 5.79406 5.89588 5.97697 5.99874 6.03294 6.12040 6.19931 6.25401 6.39348 6.43981 6.49926 6.60224 6.65223 6.66245 6.74244 6.76814 6.86669 6.99477 7.03327 7.18496 7.25121 7.53177 7.73262 7.94225 8.52129 9.01038 9.56172 11.04741 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.010611 C = 0.009014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.638984 B = 2638.162457 C = 3105.501590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.162 4.162 3 C -0.041 4.041 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.210 4.210 10 C 0.040 3.960 11 H 0.081 0.919 12 C -0.485 4.485 13 H 0.064 0.936 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.891 3.109 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 H 0.043 0.957 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 9.896 -4.861 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.163 4.163 3 C -0.059 4.059 4 C -0.144 4.144 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.147 4.147 9 C -0.248 4.248 10 C 0.021 3.979 11 H 0.099 0.901 12 C -0.522 4.522 13 H 0.082 0.918 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.068 9.728 -4.737 11.247 hybrid contribution 0.829 0.073 0.346 0.901 sum -2.240 9.801 -4.391 10.971 Atomic orbital electron populations 1.21202 0.94767 1.00205 0.99710 1.21506 0.92313 0.91076 1.11392 1.20544 1.00475 0.91928 0.92939 1.21515 0.98530 0.93870 1.00510 1.21558 1.01096 0.97159 0.95952 1.21505 1.00030 0.97841 0.95932 1.21549 0.99643 0.96147 0.98345 1.21553 0.99771 0.95000 0.98410 1.23087 1.00321 1.00714 1.00676 1.20101 0.96236 0.93587 0.87973 0.90089 1.20780 1.05570 1.04603 1.21262 0.91838 1.25038 0.97358 0.94941 0.96378 1.69958 1.39012 1.10055 1.33614 0.86547 0.83597 0.78544 0.79418 1.19588 1.20921 1.20966 0.93742 0.93213 0.94350 0.89839 0.92873 0.91713 0.92172 0.92930 0.93020 0.92566 0.92272 0.93051 0.92488 0.93021 0.92134 0.90954 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 8.75 37.16 0.32 -1.55 16 2 C -0.16 -3.40 1.78 -154.47 -0.27 -3.68 16 3 C -0.04 -0.77 1.96 -90.62 -0.18 -0.95 16 4 C -0.11 -1.83 4.40 -26.73 -0.12 -1.94 16 5 C -0.12 -1.77 5.92 -26.73 -0.16 -1.93 16 6 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 7 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 8 C -0.11 -1.81 5.09 -26.73 -0.14 -1.94 16 9 C -0.21 -4.75 9.25 -26.73 -0.25 -4.99 16 10 C 0.04 1.01 5.46 -91.73 -0.50 0.51 16 11 H 0.08 2.27 7.59 -51.93 -0.39 1.88 16 12 C -0.49 -13.26 8.65 -34.44 -0.30 -13.56 16 13 H 0.06 1.71 5.68 -52.48 -0.30 1.41 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -25.98 12.94 55.43 0.72 -25.27 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 21 H 0.05 0.88 6.98 -51.93 -0.36 0.51 16 22 H 0.04 0.63 7.84 -51.93 -0.41 0.23 16 23 H 0.08 1.81 5.46 -51.93 -0.28 1.53 16 24 H 0.05 0.86 6.88 -51.93 -0.36 0.50 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 33 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.64 8.00 -51.93 -0.42 1.23 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -27.79 277.90 -8.38 -36.16 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.26 Total: 0.57 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -2.00 Total: -31.88 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.72 Total: -25.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.79 -8.38 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.797 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds