Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 115.55004 * 2 1 4 4 C 1.52996 * 109.47252 * 40.46202 * 3 2 1 5 5 C 1.52999 * 109.47252 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47320 * 60.00176 * 5 4 3 7 7 C 1.53005 * 109.46916 * 300.00027 * 6 5 4 8 8 C 1.52999 * 109.47148 * 59.99868 * 7 6 5 9 9 C 1.53003 * 117.49546 * 214.33261 * 2 1 3 10 10 C 1.53003 * 60.03033 * 252.47453 * 9 2 1 11 11 H 1.09000 * 117.49463 * 107.50080 * 10 9 2 12 12 C 1.50700 * 117.50156 * 252.52292 * 10 9 2 13 13 H 1.08003 * 119.99633 * 54.82584 * 12 10 9 14 14 C 1.37869 * 119.99957 * 234.82673 * 12 10 9 15 15 N 1.31510 * 120.00238 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00067 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46955 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47433 * 119.99932 * 16 14 12 19 19 H 1.48503 * 109.46977 * 240.00395 * 16 14 12 20 20 H 1.09003 * 109.47400 * 180.08140 * 1 2 3 21 21 H 1.09000 * 109.47086 * 300.08789 * 1 2 3 22 22 H 1.09005 * 109.47184 * 60.08508 * 1 2 3 23 23 H 1.08996 * 109.46802 * 160.46383 * 3 2 1 24 24 H 1.09003 * 109.47128 * 300.00149 * 4 3 2 25 25 H 1.09003 * 109.47131 * 59.99740 * 4 3 2 26 26 H 1.09002 * 109.46444 * 299.99987 * 5 4 3 27 27 H 1.09005 * 109.46964 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.47322 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47420 * 59.99519 * 6 5 4 30 30 H 1.08996 * 109.47368 * 300.00093 * 7 6 5 31 31 H 1.09003 * 109.47232 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47576 * 179.97438 * 8 7 6 33 33 H 1.09003 * 109.47176 * 59.99940 * 8 7 6 34 34 H 1.08994 * 117.50201 * 359.97438 * 9 2 1 35 35 H 1.09003 * 117.49642 * 144.97843 * 9 2 1 36 36 H 0.97001 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.4197 2.3139 0.9361 5 6 2.0800 3.6940 0.9366 6 6 2.0641 4.2675 -0.4818 7 6 2.8344 3.3340 -1.4179 8 6 2.1741 1.9538 -1.4184 9 6 2.2364 -1.1208 -0.7655 10 6 2.2376 -1.1216 0.7646 11 1 1.6130 -1.8596 1.2679 12 6 3.5307 -0.7815 1.4596 13 1 4.0395 0.1434 1.2311 14 6 4.0642 -1.6509 2.3872 15 7 3.4449 -2.7773 2.6650 16 14 5.6675 -1.2297 3.2483 17 1 6.1609 0.0835 2.7609 18 1 5.4389 -1.1602 4.7139 19 1 6.6777 -2.2776 2.9538 20 1 -0.3634 -1.0277 0.0015 21 1 -0.3633 0.5152 0.8892 22 1 -0.3634 0.5125 -0.8908 23 1 3.2203 1.2904 0.3436 24 1 0.3892 2.4038 0.5924 25 1 1.4313 1.9055 1.9467 26 1 3.1103 3.6037 1.2805 27 1 1.5315 4.3590 1.6038 28 1 2.5341 5.2509 -0.4813 29 1 1.0338 4.3577 -0.8258 30 1 3.8647 3.2437 -1.0740 31 1 2.8235 3.7428 -2.4283 32 1 2.7225 1.2889 -2.0856 33 1 1.1437 2.0441 -1.7623 34 1 1.6112 -1.8583 -1.2686 35 1 3.1711 -0.8746 -1.2693 36 1 3.8204 -3.3892 3.3173 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259987572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -29.591456 kcal Electronic energy + Delta-G solvation = -14316.639554 eV Core-core repulsion = 12185.206747 eV Total energy + Delta-G solvation = -2131.432807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29252 -37.42967 -34.41364 -31.57347 -31.18347 -29.30018 -27.14231 -23.82200 -23.39304 -22.09167 -20.65191 -19.45601 -18.22396 -16.66836 -16.09899 -15.39351 -15.28338 -14.89221 -14.66946 -14.16649 -14.01777 -13.25669 -13.10210 -12.99312 -12.95175 -12.72809 -12.66745 -12.39524 -12.14263 -11.85188 -11.68009 -11.38007 -11.31660 -10.92893 -10.83097 -10.65275 -10.15737 -9.80332 -8.17662 -6.17853 1.37779 1.39239 1.51455 2.40035 2.98754 3.57750 3.89275 4.01531 4.10753 4.33958 4.39232 4.51741 4.58247 4.71823 4.76135 4.77275 4.84795 4.86388 4.91762 5.04357 5.11250 5.13808 5.17156 5.24593 5.32693 5.35917 5.39172 5.41340 5.55612 5.57036 5.72611 5.75270 5.79034 5.96098 6.44724 6.89211 7.41324 8.94287 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.030308 B = 0.010611 C = 0.009014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.638984 B = 2638.162457 C = 3105.501590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.133 4.133 3 C -0.042 4.042 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.105 4.105 9 C -0.203 4.203 10 C -0.005 4.005 11 H 0.046 0.954 12 C -0.493 4.493 13 H 0.063 0.937 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.957 3.043 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.280 1.280 20 H 0.038 0.962 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 12.309 -5.882 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.134 4.134 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.156 4.156 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.142 4.142 9 C -0.241 4.241 10 C -0.024 4.024 11 H 0.064 0.936 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.190 4.190 15 N -0.569 5.569 16 Si 0.782 3.218 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.206 1.206 20 H 0.057 0.943 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.452 12.155 -5.768 13.890 hybrid contribution 0.895 -0.692 0.621 1.291 sum -2.557 11.463 -5.147 12.823 Atomic orbital electron populations 1.21223 0.92441 1.00568 1.01522 1.21662 0.94007 0.91073 1.06630 1.20523 0.98572 0.91417 0.95480 1.21474 0.99425 0.94801 0.98445 1.21549 1.00263 0.95981 0.97831 1.21492 1.00888 0.98298 0.94145 1.21544 0.98920 0.95004 1.00054 1.21484 1.00793 0.96107 0.95816 1.23028 1.00756 1.02060 0.98271 1.19973 0.96547 0.96359 0.89492 0.93592 1.21075 1.06243 1.04386 1.21333 0.91892 1.25863 1.00801 0.94880 0.97460 1.70090 1.40838 1.11259 1.34746 0.85514 0.79458 0.78506 0.78290 1.18746 1.20407 1.20584 0.94266 0.92383 0.91379 0.93163 0.91187 0.94314 0.93529 0.91011 0.90932 0.91211 0.93369 0.90730 0.93547 0.91585 0.91162 0.91416 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.53 8.75 71.98 0.63 -2.90 16 2 C -0.13 -5.55 1.78 -52.16 -0.09 -5.64 16 3 C -0.04 -1.55 1.96 -10.79 -0.02 -1.57 16 4 C -0.10 -3.39 4.40 30.59 0.13 -3.25 16 5 C -0.12 -3.20 5.92 30.59 0.18 -3.02 16 6 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 7 C -0.12 -2.98 5.92 30.60 0.18 -2.80 16 8 C -0.10 -3.18 5.09 30.59 0.16 -3.03 16 9 C -0.20 -9.27 9.25 30.60 0.28 -8.99 16 10 C -0.01 -0.27 5.46 -11.51 -0.06 -0.33 16 11 H 0.05 2.72 7.59 -2.39 -0.02 2.70 16 12 C -0.49 -27.86 8.65 25.60 0.22 -27.64 16 13 H 0.06 3.49 5.68 -2.91 -0.02 3.47 16 14 C 0.01 0.46 5.46 84.65 0.46 0.92 16 15 N -0.93 -56.42 12.94 21.44 0.28 -56.15 16 16 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H 0.04 1.40 8.11 -2.39 -0.02 1.38 16 21 H 0.06 1.94 6.98 -2.39 -0.02 1.93 16 22 H 0.07 2.01 7.84 -2.38 -0.02 1.99 16 23 H 0.05 2.21 5.46 -2.39 -0.01 2.20 16 24 H 0.07 2.04 6.88 -2.39 -0.02 2.02 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.50 7.73 -2.39 -0.02 1.48 16 33 H 0.07 1.83 7.84 -2.39 -0.02 1.82 16 34 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.07 3.11 8.00 -2.39 -0.02 3.09 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -61.45 277.90 5.58 -55.88 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.02 Total: 14.23 kcal Atomic # 6 Polarization: -62.83 SS G_CDS: 2.25 Total: -60.57 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.45 5.58 -55.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.286 kcal (2) G-P(sol) polarization free energy of solvation -61.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds