Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.06872 * 53.46260 * 10 9 7 12 12 C 1.54019 * 110.08646 * 291.87015 * 10 9 7 13 13 C 1.54618 * 106.58128 * 242.52273 * 12 10 9 14 14 C 1.53993 * 103.45812 * 23.06320 * 13 12 10 15 15 H 1.08999 * 108.59135 * 76.52699 * 14 13 12 16 16 C 1.51340 * 112.19600 * 198.11097 * 14 13 12 17 17 C 1.52849 * 111.92691 * 65.20000 * 16 14 13 18 18 C 1.53293 * 108.23952 * 58.74350 * 17 16 14 19 19 C 1.52629 * 108.53023 * 296.32468 * 18 17 16 20 20 C 1.53050 * 110.87434 * 62.21824 * 19 18 17 21 21 H 1.08997 * 111.77296 * 72.11220 * 20 19 18 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.08997 * 110.03493 * 1.80506 * 12 10 9 26 26 H 1.09000 * 110.03078 * 123.24528 * 12 10 9 27 27 H 1.08999 * 110.62825 * 264.56470 * 13 12 10 28 28 H 1.09002 * 110.75549 * 141.61587 * 13 12 10 29 29 H 1.08996 * 109.07584 * 304.40805 * 16 14 13 30 30 H 1.09002 * 108.58874 * 185.66470 * 16 14 13 31 31 H 1.08998 * 109.70822 * 299.05712 * 17 16 14 32 32 H 1.08998 * 109.74638 * 178.45115 * 17 16 14 33 33 H 1.08996 * 109.62446 * 176.61259 * 18 17 16 34 34 H 1.08997 * 109.78373 * 56.12868 * 18 17 16 35 35 H 1.09002 * 109.19777 * 301.86023 * 19 18 17 36 36 H 1.09001 * 109.15862 * 182.55278 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9509 -3.5507 0.8218 12 6 2.9995 -3.7134 -1.3433 13 6 2.6393 -5.0657 -2.0006 14 6 1.2982 -5.4385 -1.3417 15 1 0.5103 -4.8346 -1.7918 16 6 0.9725 -6.9079 -1.4998 17 6 1.9694 -7.7967 -0.7564 18 6 1.9410 -7.4127 0.7274 19 6 2.4224 -5.9708 0.8646 20 6 1.4878 -5.0111 0.1245 21 1 0.5344 -4.8969 0.6404 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 2.6803 -2.8905 -1.9828 26 1 4.0742 -3.6570 -1.1699 27 1 3.3983 -5.8155 -1.7773 28 1 2.5191 -4.9518 -3.0779 29 1 0.9877 -7.1643 -2.5590 30 1 -0.0275 -7.0866 -1.1046 31 1 2.9709 -7.6408 -1.1574 32 1 1.6865 -8.8431 -0.8709 33 1 2.6006 -8.0740 1.2893 34 1 0.9243 -7.4973 1.1109 35 1 3.4259 -5.8868 0.4475 36 1 2.4495 -5.7017 1.9205 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = -49.402942 kcal Electronic energy + Delta-G solvation = -14273.284256 eV Core-core repulsion = 12140.992358 eV Total energy + Delta-G solvation = -2132.291897 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.58126 -34.77633 -32.62430 -31.30595 -28.90714 -28.08771 -25.10711 -22.64672 -21.86858 -21.25636 -18.57584 -18.01559 -16.22074 -15.47792 -14.56356 -14.31305 -13.95552 -13.69927 -13.37420 -12.53076 -12.18652 -12.04055 -11.71119 -11.57298 -11.22059 -10.89838 -10.87519 -10.79645 -10.65556 -10.16321 -10.03900 -9.91578 -9.70941 -9.59664 -9.36465 -8.97358 -8.73652 -8.27896 -5.93813 -3.95058 3.34628 3.40908 3.44368 4.50457 4.96654 4.98678 5.08100 5.39626 5.41974 5.54347 5.58074 5.64843 5.80873 5.85145 5.91657 6.06479 6.18352 6.21857 6.26473 6.28908 6.37507 6.39460 6.48628 6.54876 6.65090 6.71988 6.89083 6.91332 7.11894 7.17798 7.37702 7.76658 7.93870 8.07803 8.51806 9.12334 9.68369 11.17424 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.058271 B = 0.007523 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.399128 B = 3721.057176 C = 3754.983236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.081 4.081 11 H 0.055 0.945 12 C -0.110 4.110 13 C -0.119 4.119 14 C -0.085 4.085 15 H 0.070 0.930 16 C -0.107 4.107 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.084 4.084 21 H 0.072 0.928 22 H 0.259 0.741 23 H 0.012 0.988 24 H 0.016 0.984 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -13.208 -1.605 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.100 4.100 11 H 0.074 0.926 12 C -0.148 4.148 13 C -0.156 4.156 14 C -0.104 4.104 15 H 0.089 0.911 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.102 4.102 21 H 0.091 0.909 22 H 0.068 0.932 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.450 -13.074 -1.603 13.616 hybrid contribution 0.420 1.082 -0.006 1.161 sum 3.870 -11.992 -1.609 12.703 Atomic orbital electron populations 1.69973 1.06005 1.26377 1.51331 1.25019 0.94799 0.99101 0.95613 0.86658 0.79890 0.83809 0.78025 1.20768 1.21316 1.19961 1.21284 0.92981 0.91115 1.49794 0.92793 1.19183 0.93596 0.91036 0.96896 1.22132 0.97584 0.94338 0.95901 0.92647 1.22194 0.98660 0.96357 0.97597 1.22341 0.96835 0.97782 0.98663 1.21343 0.98032 0.94573 0.96418 0.91150 1.21061 0.98816 0.95114 0.99488 1.21545 0.99808 0.98198 0.95832 1.21533 1.01002 0.97003 0.96095 1.21541 0.99453 0.93838 0.99906 1.22034 0.98205 0.95494 0.94459 0.90946 0.93154 0.96934 0.96609 0.90956 0.93643 0.92513 0.92824 0.92754 0.92582 0.92013 0.92758 0.92854 0.92262 0.92259 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.61 8.45 -34.44 -0.29 -14.90 16 8 H 0.05 1.50 7.72 -52.49 -0.41 1.10 16 9 C 0.03 0.78 4.20 -27.88 -0.12 0.66 16 10 C -0.08 -1.69 2.20 -88.91 -0.20 -1.88 16 11 H 0.06 1.18 7.76 -51.93 -0.40 0.78 16 12 C -0.11 -2.11 6.05 -25.35 -0.15 -2.27 16 13 C -0.12 -1.89 5.74 -25.36 -0.15 -2.04 16 14 C -0.09 -1.37 2.77 -90.47 -0.25 -1.62 16 15 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.11 -1.42 5.35 -27.65 -0.15 -1.57 16 17 C -0.12 -1.39 5.80 -26.66 -0.15 -1.55 16 18 C -0.12 -1.49 5.93 -26.77 -0.16 -1.65 16 19 C -0.11 -1.64 4.62 -26.90 -0.12 -1.76 16 20 C -0.08 -1.46 2.90 -88.95 -0.26 -1.72 16 21 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.01 0.35 8.11 -51.93 -0.42 -0.08 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 1.55 7.39 -51.93 -0.38 1.16 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.83 6.11 -51.93 -0.32 0.51 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.74 6.78 -51.93 -0.35 0.39 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 272.27 15.07 4.10 4.10 Total: -1.00 -29.36 272.27 -8.70 -38.06 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.43 Total: -3.74 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -2.09 Total: -28.79 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.36 -8.70 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.339 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds