Wall clock time and date at job start Mon Mar 30 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.24197 * 55.54989 * 10 9 7 12 12 C 1.54907 * 110.27203 * 293.54595 * 10 9 7 13 13 C 1.55317 * 106.37811 * 244.49273 * 12 10 9 14 14 C 1.53274 * 102.93611 * 23.95433 * 13 12 10 15 15 H 1.08998 * 110.40785 * 75.68423 * 14 13 12 16 16 C 1.51786 * 115.78818 * 202.00018 * 14 13 12 17 17 C 1.53731 * 107.25527 * 177.04452 * 16 14 13 18 18 C 1.52568 * 111.49451 * 302.18394 * 17 16 14 19 19 C 1.53769 * 111.45440 * 54.78614 * 18 17 16 20 20 C 1.51188 * 107.99640 * 302.94578 * 19 18 17 21 21 H 1.08997 * 108.84900 * 304.36512 * 20 19 18 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09002 * 110.07711 * 3.72048 * 12 10 9 26 26 H 1.09004 * 110.07293 * 125.26700 * 12 10 9 27 27 H 1.08996 * 110.72344 * 142.31644 * 13 12 10 28 28 H 1.09002 * 110.71918 * 265.59380 * 13 12 10 29 29 H 1.09001 * 109.90134 * 296.47923 * 16 14 13 30 30 H 1.09004 * 109.89983 * 57.59988 * 16 14 13 31 31 H 1.08997 * 109.07395 * 62.69819 * 17 16 14 32 32 H 1.08992 * 109.07874 * 181.73555 * 17 16 14 33 33 H 1.09008 * 109.08439 * 175.29067 * 18 17 16 34 34 H 1.08996 * 109.08794 * 294.27483 * 18 17 16 35 35 H 1.08996 * 109.89758 * 61.94199 * 19 18 17 36 36 H 1.08995 * 109.89786 * 182.99164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9302 -3.5727 0.8428 12 6 3.0354 -3.6927 -1.3327 13 6 2.6454 -5.0179 -2.0427 14 6 1.2747 -5.3409 -1.4376 15 1 0.5081 -4.6961 -1.8673 16 6 0.8455 -6.7948 -1.5132 17 6 -0.5066 -6.9093 -0.7908 18 6 -0.4100 -6.4323 0.6552 19 6 0.1530 -5.0039 0.7398 20 6 1.5024 -4.9925 0.0582 21 1 2.1368 -5.7489 0.5204 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.7572 -2.8403 -1.9524 26 1 4.1069 -3.6768 -1.1327 27 1 2.5663 -4.8696 -3.1197 28 1 3.3638 -5.8047 -1.8125 29 1 0.7361 -7.0957 -2.5551 30 1 1.5846 -7.4260 -1.0197 31 1 -1.2441 -6.3035 -1.3171 32 1 -0.8287 -7.9505 -0.8005 33 1 -1.4033 -6.4510 1.1038 34 1 0.2430 -7.1061 1.2099 35 1 -0.5135 -4.3114 0.2257 36 1 0.2608 -4.7089 1.7835 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:35 Heat of formation + Delta-G solvation = -62.607539 kcal Electronic energy + Delta-G solvation = -14336.532044 eV Core-core repulsion = 12203.667552 eV Total energy + Delta-G solvation = -2132.864492 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90885 -36.32315 -34.78249 -32.90404 -30.38175 -29.13923 -27.12362 -24.33050 -23.27416 -21.70327 -20.97082 -19.58687 -18.41733 -16.56889 -16.10322 -15.79283 -15.35967 -14.90886 -14.64940 -14.24255 -14.11003 -13.62668 -13.38435 -12.95829 -12.84762 -12.64822 -12.43283 -12.18037 -12.03644 -11.63879 -11.49948 -11.42495 -11.21592 -11.10298 -10.86875 -10.70060 -10.54007 -10.43137 -8.17284 -6.26607 1.37401 1.37552 1.50768 2.40967 3.15236 3.64421 3.81559 3.87187 4.18094 4.30878 4.39072 4.44975 4.60445 4.67810 4.72161 4.80113 4.81917 4.87267 5.01037 5.10140 5.14183 5.15827 5.22663 5.26808 5.35224 5.40567 5.45013 5.49884 5.56173 5.57558 5.69448 5.79914 5.87571 5.93913 6.33050 6.91062 7.41518 8.94393 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.045395 B = 0.008628 C = 0.007796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.659837 B = 3244.457627 C = 3590.674532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.047 3.953 10 C -0.081 4.081 11 H 0.047 0.953 12 C -0.111 4.111 13 C -0.107 4.107 14 C -0.091 4.091 15 H 0.043 0.957 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.083 4.083 21 H 0.075 0.925 22 H 0.261 0.739 23 H -0.015 1.015 24 H -0.012 1.012 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -13.841 -2.078 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.010 3.990 10 C -0.099 4.099 11 H 0.065 0.935 12 C -0.148 4.148 13 C -0.144 4.144 14 C -0.110 4.110 15 H 0.062 0.938 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.102 4.102 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.003 0.997 24 H 0.006 0.994 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.389 -13.737 -2.074 14.097 hybrid contribution -0.011 1.599 0.162 1.607 sum 2.378 -12.138 -1.912 12.516 Atomic orbital electron populations 1.70115 1.07692 1.27363 1.52343 1.25949 0.95725 1.03141 0.95181 0.85485 0.79140 0.79248 0.77713 1.18701 1.20465 1.20461 1.21749 0.93325 0.92544 1.49345 0.92606 1.18939 0.93678 0.92374 0.94040 1.21518 0.96753 0.94752 0.96912 0.93490 1.22451 0.98863 0.97594 0.95923 1.22170 0.96528 0.96629 0.99083 1.21808 0.96748 0.97182 0.95228 0.93798 1.21382 0.97141 0.94389 1.00787 1.21538 0.97319 1.01437 0.95145 1.21510 1.00922 0.94862 0.97443 1.21261 0.96631 0.97386 0.99325 1.21520 0.95819 0.96362 0.96451 0.90681 0.93027 0.99687 0.99384 0.93966 0.92187 0.91645 0.89892 0.90916 0.90580 0.93546 0.90055 0.91899 0.91028 0.94660 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 3 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -31.09 8.36 25.60 0.21 -30.88 16 8 H 0.06 3.17 7.68 -2.91 -0.02 3.14 16 9 C 0.05 2.53 3.29 29.85 0.10 2.63 16 10 C -0.08 -3.45 2.83 -10.31 -0.03 -3.48 16 11 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 12 C -0.11 -4.23 6.16 32.04 0.20 -4.03 16 13 C -0.11 -3.20 6.45 31.48 0.20 -3.00 16 14 C -0.09 -2.87 2.30 -10.32 -0.02 -2.89 16 15 H 0.04 1.65 7.92 -2.39 -0.02 1.63 16 16 C -0.10 -2.35 5.68 30.44 0.17 -2.18 16 17 C -0.12 -2.75 5.85 30.70 0.18 -2.57 16 18 C -0.11 -2.87 5.86 30.71 0.18 -2.69 16 19 C -0.11 -3.82 4.40 30.26 0.13 -3.68 16 20 C -0.08 -2.90 2.06 -10.77 -0.02 -2.92 16 21 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 22 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.02 -0.91 7.97 -2.39 -0.02 -0.93 16 24 H -0.01 -0.72 7.13 -2.39 -0.02 -0.74 16 25 H 0.04 1.85 7.33 -2.39 -0.02 1.84 16 26 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.58 8.07 -2.38 -0.02 1.56 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.46 7.24 -2.39 -0.02 1.44 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.93 273.94 5.08 -59.85 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.01 Total: 6.05 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 1.77 Total: -55.39 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.16 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -64.93 5.08 -59.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -64.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds