Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.50698 * 109.47324 * 240.00101 * 2 1 3 5 5 H 1.08002 * 119.99731 * 239.99473 * 4 2 1 6 6 C 1.37876 * 120.00206 * 59.99997 * 4 2 1 7 7 N 1.31515 * 119.99698 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00258 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47065 * 59.99805 * 8 6 4 10 10 H 1.48493 * 109.47453 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47168 * 299.99923 * 8 6 4 12 12 C 1.53000 * 109.47180 * 120.00163 * 2 1 3 13 13 C 1.46803 * 117.37442 * 300.00190 * 12 2 1 14 14 H 1.08994 * 107.61229 * 148.71692 * 13 12 2 15 15 C 1.52061 * 136.98718 * 2.03622 * 13 12 2 16 16 C 1.57947 * 99.74588 * 220.74657 * 15 13 12 17 17 C 1.50783 * 105.44979 * 325.67522 * 16 15 13 18 18 C 1.51144 * 105.55575 * 104.27966 * 17 16 15 19 19 C 1.49188 * 115.16867 * 261.62324 * 18 17 16 20 20 C 1.47433 * 116.53838 * 229.79222 * 12 2 1 21 21 H 1.09003 * 114.54101 * 0.65701 * 20 12 2 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47377 * 299.99861 * 1 2 3 24 24 H 1.09004 * 109.46777 * 60.00527 * 1 2 3 25 25 H 0.97005 * 119.99385 * 180.02562 * 7 6 4 26 26 H 1.09000 * 115.41812 * 85.01414 * 12 2 1 27 27 H 1.08999 * 111.35380 * 103.11545 * 15 13 12 28 28 H 1.08998 * 111.40913 * 338.39871 * 15 13 12 29 29 H 1.09003 * 110.23821 * 84.65969 * 16 15 13 30 30 H 1.09000 * 110.24026 * 206.68695 * 16 15 13 31 31 H 1.09005 * 110.17048 * 223.23568 * 17 16 15 32 32 H 1.08996 * 110.17551 * 345.09464 * 17 16 15 33 33 H 1.08999 * 108.18366 * 140.30181 * 18 17 16 34 34 H 1.09000 * 108.58743 * 23.24855 * 18 17 16 35 35 H 1.08993 * 110.56232 * 299.20654 * 19 18 17 36 36 H 1.09009 * 110.55403 * 176.31985 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.8283 -2.5197 -4.0082 10 1 1.8281 -0.4192 -5.2204 11 1 3.8077 -1.1188 -4.0077 12 6 2.0400 -0.7213 1.2492 13 6 1.6504 -0.1705 2.5530 14 1 1.5777 -1.0020 3.2539 15 6 0.7937 0.9772 3.0641 16 6 1.7071 1.4861 4.2480 17 6 2.3643 0.2500 4.8081 18 6 3.7880 0.2830 4.3015 19 6 4.0533 -0.5595 3.0992 20 6 3.0624 -0.0175 2.0449 21 1 3.3421 0.9623 1.6578 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7090 1.1614 -3.4845 26 1 2.1153 -1.8055 1.1655 27 1 -0.1691 0.6211 3.4305 28 1 0.6648 1.7470 2.3033 29 1 2.4616 2.1770 3.8719 30 1 1.0989 1.9693 5.0126 31 1 2.3518 0.2786 5.8977 32 1 1.8538 -0.6432 4.4482 33 1 4.4431 -0.0519 5.1057 34 1 4.0475 1.3141 4.0613 35 1 3.8483 -1.6082 3.3138 36 1 5.0813 -0.4301 2.7605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = 32.008826 kcal Electronic energy + Delta-G solvation = -14308.748744 eV Core-core repulsion = 12179.987125 eV Total energy + Delta-G solvation = -2128.761618 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33624 -35.26519 -32.86036 -31.94446 -29.59064 -26.10200 -25.00558 -23.44338 -22.03942 -20.32718 -19.38647 -17.87152 -16.26816 -14.92338 -14.69560 -14.38506 -14.13722 -13.42186 -12.84410 -12.59234 -12.33936 -12.28901 -11.68374 -11.32129 -11.14706 -10.84425 -10.75792 -10.55964 -10.39870 -10.25620 -10.07549 -10.00650 -9.64325 -9.27207 -8.83372 -8.72246 -8.40169 -8.21306 -5.90552 -3.95940 3.36208 3.40493 3.43360 4.49167 4.53525 4.89952 5.08318 5.26586 5.39229 5.39428 5.50563 5.69732 5.77384 5.89281 6.10109 6.12039 6.17159 6.25594 6.30405 6.31446 6.48409 6.56995 6.61462 6.67239 6.77455 6.84435 7.00604 7.02677 7.10309 7.35353 7.50154 7.81694 8.08180 8.24210 8.56044 9.06968 9.67841 11.15234 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.008372 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.910694 B = 3343.702645 C = 3689.796536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.025 0.975 4 C -0.507 4.507 5 H 0.053 0.947 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.074 4.074 13 C -0.188 4.188 14 H 0.075 0.925 15 C -0.073 4.073 16 C -0.120 4.120 17 C -0.139 4.139 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.161 4.161 21 H 0.089 0.911 22 H 0.022 0.978 23 H 0.013 0.987 24 H 0.078 0.922 25 H 0.259 0.741 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -0.357 11.886 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.043 0.957 4 C -0.546 4.546 5 H 0.072 0.928 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.092 4.092 13 C -0.206 4.206 14 H 0.093 0.907 15 C -0.111 4.111 16 C -0.157 4.157 17 C -0.176 4.176 18 C -0.150 4.150 19 C -0.118 4.118 20 C -0.180 4.180 21 H 0.107 0.893 22 H 0.041 0.959 23 H 0.032 0.968 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.049 -0.226 11.788 11.966 hybrid contribution 0.414 -0.446 -0.888 1.076 sum 2.463 -0.672 10.900 11.194 Atomic orbital electron populations 1.21757 0.98407 0.98804 1.00035 1.18340 0.92385 0.94867 0.89300 0.95736 1.21200 1.30568 1.12146 0.90646 0.92848 1.24962 0.95259 0.95057 0.98874 1.69889 1.37102 1.23061 1.23185 0.86710 0.79178 0.79791 0.82601 1.20382 1.21396 1.20387 1.20944 0.96114 0.98874 0.93274 1.20993 0.99933 1.00493 0.99197 0.90703 1.21714 0.95955 0.96782 0.96610 1.22442 0.99016 0.96886 0.97359 1.21491 0.96754 1.00797 0.98559 1.20768 0.96611 1.00619 0.97022 1.20725 0.98386 0.98565 0.94131 1.21701 0.90761 1.03371 1.02124 0.89288 0.95910 0.96836 0.90287 0.93137 0.89756 0.91591 0.91295 0.91709 0.93136 0.93269 0.88735 0.93981 0.92415 0.92329 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.79 37.16 0.33 -2.93 16 2 C 0.07 1.76 2.38 -91.77 -0.22 1.54 16 3 H 0.02 0.68 7.65 -51.93 -0.40 0.28 16 4 C -0.51 -14.20 8.54 -34.44 -0.29 -14.50 16 5 H 0.05 1.48 7.73 -52.49 -0.41 1.07 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -26.04 11.32 55.43 0.63 -25.42 16 8 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C -0.07 -1.57 4.76 -96.27 -0.46 -2.03 16 13 C -0.19 -3.33 2.85 -95.15 -0.27 -3.60 16 14 H 0.08 1.25 5.15 -51.93 -0.27 0.98 16 15 C -0.07 -1.17 5.95 -24.50 -0.15 -1.32 16 16 C -0.12 -1.63 6.08 -25.13 -0.15 -1.78 16 17 C -0.14 -1.81 5.64 -28.78 -0.16 -1.97 16 18 C -0.11 -1.50 4.99 -29.54 -0.15 -1.64 16 19 C -0.08 -1.21 6.24 -27.82 -0.17 -1.38 16 20 C -0.16 -2.98 5.20 -93.60 -0.49 -3.47 16 21 H 0.09 1.78 7.74 -51.93 -0.40 1.38 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.01 0.28 6.01 -51.93 -0.31 -0.03 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.08 1.81 8.10 -51.93 -0.42 1.39 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16 29 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.31 4.44 -51.93 -0.23 1.08 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16 35 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -28.16 268.20 -8.57 -36.73 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.94 Total: -0.52 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -2.28 Total: -31.51 kcal Atomic # 7 Polarization: -26.04 SS G_CDS: 0.63 Total: -25.42 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.16 -8.57 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.740 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds