Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.50698 * 109.47324 * 240.00101 * 2 1 3 5 5 H 1.08002 * 119.99731 * 239.99473 * 4 2 1 6 6 C 1.37876 * 120.00206 * 59.99997 * 4 2 1 7 7 N 1.31515 * 119.99698 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00258 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47065 * 59.99805 * 8 6 4 10 10 H 1.48493 * 109.47453 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47168 * 299.99923 * 8 6 4 12 12 C 1.53000 * 109.47180 * 120.00163 * 2 1 3 13 13 C 1.46803 * 117.37442 * 300.00190 * 12 2 1 14 14 H 1.08994 * 107.61229 * 148.71692 * 13 12 2 15 15 C 1.52061 * 136.98718 * 2.03622 * 13 12 2 16 16 C 1.57947 * 99.74588 * 220.74657 * 15 13 12 17 17 C 1.50783 * 105.44979 * 325.67522 * 16 15 13 18 18 C 1.51144 * 105.55575 * 104.27966 * 17 16 15 19 19 C 1.49188 * 115.16867 * 261.62324 * 18 17 16 20 20 C 1.47433 * 116.53838 * 229.79222 * 12 2 1 21 21 H 1.09003 * 114.54101 * 0.65701 * 20 12 2 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47377 * 299.99861 * 1 2 3 24 24 H 1.09004 * 109.46777 * 60.00527 * 1 2 3 25 25 H 0.97005 * 119.99385 * 180.02562 * 7 6 4 26 26 H 1.09000 * 115.41812 * 85.01414 * 12 2 1 27 27 H 1.08999 * 111.35380 * 103.11545 * 15 13 12 28 28 H 1.08998 * 111.40913 * 338.39871 * 15 13 12 29 29 H 1.09003 * 110.23821 * 84.65969 * 16 15 13 30 30 H 1.09000 * 110.24026 * 206.68695 * 16 15 13 31 31 H 1.09005 * 110.17048 * 223.23568 * 17 16 15 32 32 H 1.08996 * 110.17551 * 345.09464 * 17 16 15 33 33 H 1.08999 * 108.18366 * 140.30181 * 18 17 16 34 34 H 1.09000 * 108.58743 * 23.24855 * 18 17 16 35 35 H 1.08993 * 110.56232 * 299.20654 * 19 18 17 36 36 H 1.09009 * 110.55403 * 176.31985 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1194 -4.0079 9 1 1.8283 -2.5197 -4.0082 10 1 1.8281 -0.4192 -5.2204 11 1 3.8077 -1.1188 -4.0077 12 6 2.0400 -0.7213 1.2492 13 6 1.6504 -0.1705 2.5530 14 1 1.5777 -1.0020 3.2539 15 6 0.7937 0.9772 3.0641 16 6 1.7071 1.4861 4.2480 17 6 2.3643 0.2500 4.8081 18 6 3.7880 0.2830 4.3015 19 6 4.0533 -0.5595 3.0992 20 6 3.0624 -0.0175 2.0449 21 1 3.3421 0.9623 1.6578 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7090 1.1614 -3.4845 26 1 2.1153 -1.8055 1.1655 27 1 -0.1691 0.6211 3.4305 28 1 0.6648 1.7470 2.3033 29 1 2.4616 2.1770 3.8719 30 1 1.0989 1.9693 5.0126 31 1 2.3518 0.2786 5.8977 32 1 1.8538 -0.6432 4.4482 33 1 4.4431 -0.0519 5.1057 34 1 4.0475 1.3141 4.0613 35 1 3.8483 -1.6082 3.3138 36 1 5.0813 -0.4301 2.7605 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = 18.427851 kcal Electronic energy + Delta-G solvation = -14309.337659 eV Core-core repulsion = 12179.987125 eV Total energy + Delta-G solvation = -2129.350534 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.71537 -36.85522 -34.71249 -33.19165 -31.52574 -27.53842 -26.98431 -24.71605 -23.66175 -21.69425 -20.94420 -19.32445 -18.35347 -16.68909 -16.27326 -15.70771 -15.44412 -14.82351 -14.54018 -14.15849 -13.71033 -13.62961 -13.42315 -12.95892 -12.79396 -12.73910 -12.58210 -12.22798 -12.07480 -11.70277 -11.51771 -11.39190 -11.12344 -10.90280 -10.67953 -10.47996 -10.09411 -9.99644 -8.07000 -6.20670 1.40162 1.41853 1.49481 2.43656 3.05960 3.21386 3.63835 3.96197 4.06830 4.11557 4.32425 4.49303 4.51114 4.53675 4.75584 4.85775 4.93880 4.97596 5.02329 5.04994 5.13711 5.15792 5.22586 5.31146 5.35271 5.40851 5.46565 5.55074 5.59720 5.62620 5.64759 5.72674 6.00032 6.16714 6.42674 6.90579 7.46909 8.97266 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.050538 B = 0.008372 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.910694 B = 3343.702645 C = 3689.796536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.071 3.929 3 H -0.012 1.012 4 C -0.529 4.529 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.273 1.273 12 C -0.102 4.102 13 C -0.170 4.170 14 H 0.097 0.903 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.113 4.113 19 C -0.073 4.073 20 C -0.160 4.160 21 H 0.063 0.937 22 H 0.021 0.979 23 H 0.036 0.964 24 H 0.049 0.951 25 H 0.260 0.740 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -1.178 13.639 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.006 0.994 4 C -0.567 4.567 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.198 1.198 12 C -0.120 4.120 13 C -0.187 4.187 14 H 0.114 0.886 15 C -0.117 4.117 16 C -0.150 4.150 17 C -0.173 4.173 18 C -0.150 4.150 19 C -0.111 4.111 20 C -0.179 4.179 21 H 0.082 0.918 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.550 -1.051 13.549 13.827 hybrid contribution 0.250 -0.157 -1.436 1.466 sum 2.800 -1.208 12.114 12.492 Atomic orbital electron populations 1.21592 0.98099 0.98501 0.99668 1.18211 0.92692 0.93022 0.90848 0.99403 1.21583 1.30737 1.12307 0.92121 0.93199 1.25770 0.95433 0.95791 1.01947 1.70032 1.37956 1.24257 1.23813 0.85689 0.78747 0.78860 0.78839 1.19544 1.20870 1.19797 1.20718 0.99842 0.98251 0.93198 1.21124 0.99339 1.01415 0.96837 0.88584 1.21821 0.97166 0.95574 0.97163 1.22407 0.98574 0.97357 0.96627 1.21455 0.96064 0.99710 1.00042 1.20744 0.97515 0.99999 0.96773 1.20778 0.97551 0.99356 0.93385 1.21682 0.92568 1.01764 1.01857 0.91825 0.95939 0.94543 0.93231 0.93132 0.90229 0.89975 0.93812 0.92512 0.90944 0.90792 0.89386 0.91603 0.92883 0.91349 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.11 8.79 71.98 0.63 -5.47 16 2 C 0.07 3.71 2.38 -11.54 -0.03 3.68 16 3 H -0.01 -0.71 7.65 -2.39 -0.02 -0.73 16 4 C -0.53 -30.44 8.54 25.60 0.22 -30.22 16 5 H 0.05 2.82 7.73 -2.91 -0.02 2.80 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -55.17 11.32 21.45 0.24 -54.93 16 8 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 C -0.10 -4.37 4.76 -14.45 -0.07 -4.44 16 13 C -0.17 -5.81 2.85 -13.73 -0.04 -5.85 16 14 H 0.10 2.95 5.15 -2.39 -0.01 2.93 16 15 C -0.08 -2.45 5.95 32.04 0.19 -2.26 16 16 C -0.11 -2.77 6.08 31.63 0.19 -2.58 16 17 C -0.14 -3.03 5.64 29.27 0.17 -2.87 16 18 C -0.11 -2.64 4.99 28.77 0.14 -2.50 16 19 C -0.07 -2.05 6.24 29.89 0.19 -1.86 16 20 C -0.16 -5.90 5.20 -12.73 -0.07 -5.96 16 21 H 0.06 2.64 7.74 -2.39 -0.02 2.62 16 22 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.04 1.61 6.01 -2.39 -0.01 1.59 16 24 H 0.05 2.78 6.07 -2.39 -0.01 2.76 16 25 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 26 H 0.08 3.45 8.10 -2.39 -0.02 3.43 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.04 1.55 7.64 -2.39 -0.02 1.53 16 29 H 0.06 1.50 6.73 -2.39 -0.02 1.48 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.09 2.10 4.44 -2.39 -0.01 2.09 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.30 6.72 -2.39 -0.02 1.29 16 35 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -61.65 268.20 5.28 -56.37 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.03 Total: 10.94 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 1.98 Total: -59.38 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.24 Total: -54.93 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.65 5.28 -56.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.800 kcal (2) G-P(sol) polarization free energy of solvation -61.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds