Wall clock time and date at job start Mon Mar 30 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47197 * 2 1 4 4 C 1.50704 * 109.46652 * 239.99881 * 2 1 3 5 5 H 1.08003 * 119.99638 * 245.46264 * 4 2 1 6 6 C 1.37875 * 119.99924 * 65.47028 * 4 2 1 7 7 N 1.31507 * 120.00273 * 9.51014 * 6 4 2 8 8 Si 1.86799 * 119.99515 * 189.50716 * 6 4 2 9 9 H 1.48503 * 109.47005 * 85.00031 * 8 6 4 10 10 H 1.48507 * 109.47085 * 204.99274 * 8 6 4 11 11 H 1.48494 * 109.47419 * 324.99288 * 8 6 4 12 12 C 1.52996 * 109.47237 * 119.99937 * 2 1 3 13 13 H 1.09008 * 115.53120 * 34.41430 * 12 2 1 14 14 C 1.53000 * 117.47160 * 179.97438 * 12 2 1 15 15 H 1.09000 * 118.08962 * 359.63093 * 14 12 2 16 16 C 1.53675 * 117.08087 * 213.56239 * 14 12 2 17 17 C 1.52687 * 108.94668 * 219.22512 * 16 14 12 18 18 C 1.51585 * 111.46837 * 91.04600 * 17 16 14 19 19 C 1.51582 * 113.22018 * 292.77329 * 18 17 16 20 20 C 1.52693 * 111.46997 * 67.24114 * 19 18 17 21 21 C 1.53002 * 117.46861 * 248.88841 * 12 2 1 22 22 H 1.08994 * 118.09245 * 0.36966 * 21 12 2 23 23 H 1.08998 * 109.47631 * 183.56511 * 1 2 3 24 24 H 1.08999 * 109.47212 * 303.56396 * 1 2 3 25 25 H 1.09005 * 109.47693 * 63.56168 * 1 2 3 26 26 H 0.97001 * 120.00589 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.55974 * 339.06712 * 16 14 12 28 28 H 1.09006 * 109.55614 * 99.38940 * 16 14 12 29 29 H 1.09003 * 109.08519 * 211.55584 * 17 16 14 30 30 H 1.09003 * 109.08210 * 330.53374 * 17 16 14 31 31 H 1.08999 * 108.73184 * 53.73535 * 18 17 16 32 32 H 1.08999 * 108.73378 * 171.80388 * 18 17 16 33 33 H 1.09007 * 109.07765 * 187.74520 * 19 18 17 34 34 H 1.08997 * 109.08340 * 306.79152 * 19 18 17 35 35 H 1.08998 * 109.55999 * 28.77455 * 20 19 18 36 36 H 1.08993 * 109.55742 * 148.99494 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5784 -1.6372 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.2986 1.0353 -2.5935 8 14 2.1772 -1.1776 -4.0101 9 1 1.0257 -2.0611 -4.3247 10 1 2.4237 -0.2606 -5.1520 11 1 3.3860 -2.0061 -3.7707 12 6 2.0400 -0.7212 1.2492 13 1 1.4315 -1.5594 1.5891 14 6 3.5551 -0.8282 1.4333 15 1 4.1972 -0.3935 0.6672 16 6 4.0889 -2.0966 2.1173 17 6 5.2368 -1.7123 3.0479 18 6 4.7394 -1.4141 4.4485 19 6 3.8826 -0.1660 4.5253 20 6 2.5592 -0.3502 3.7863 21 6 2.7362 0.1244 2.3175 22 1 2.8306 1.1961 2.1428 23 1 -0.3634 -1.0256 0.0639 24 1 -0.3633 0.5682 0.8563 25 1 -0.3635 0.4576 -0.9202 26 1 1.1310 1.4103 -3.4723 27 1 3.2910 -2.5628 2.6952 28 1 4.4499 -2.7943 1.3615 29 1 5.9511 -2.5345 3.0911 30 1 5.7363 -0.8283 2.6515 31 1 4.1532 -2.2632 4.7999 32 1 5.5995 -1.2895 5.1063 33 1 3.6777 0.0616 5.5715 34 1 4.4258 0.6671 4.0793 35 1 2.2744 -1.4021 3.8045 36 1 1.7853 0.2459 4.2697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:48 Heat of formation + Delta-G solvation = -13.633820 kcal Electronic energy + Delta-G solvation = -14106.922506 eV Core-core repulsion = 11976.181674 eV Total energy + Delta-G solvation = -2130.740832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91819 -35.13140 -32.84689 -31.42040 -30.06809 -25.92462 -24.97672 -23.57421 -21.52795 -20.33536 -18.79516 -18.32987 -16.02502 -15.42603 -14.70754 -14.59019 -13.64626 -13.39001 -12.85404 -12.58020 -12.33475 -11.92663 -11.56390 -11.36206 -11.33292 -10.85474 -10.77032 -10.58335 -10.47879 -10.31187 -10.20181 -10.08944 -10.00056 -9.36508 -9.12875 -8.52229 -8.38414 -8.18958 -5.93728 -3.93993 3.35197 3.41531 3.44296 4.47338 4.69237 4.91580 5.12223 5.18934 5.38638 5.48966 5.59251 5.65742 5.86141 5.87143 5.92836 5.98453 6.12232 6.24189 6.29515 6.38057 6.42309 6.52615 6.57336 6.66860 6.70460 6.80048 6.91868 6.98540 7.15463 7.32862 7.41708 7.79778 8.06514 8.09484 8.55684 9.10107 9.68440 11.15349 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.008420 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.896373 B = 3324.653197 C = 3734.755663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.066 3.934 3 H 0.032 0.968 4 C -0.503 4.503 5 H 0.055 0.945 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 C -0.106 4.106 13 H 0.081 0.919 14 C -0.143 4.143 15 H 0.102 0.898 16 C -0.086 4.086 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.086 4.086 21 C -0.167 4.167 22 H 0.098 0.902 23 H 0.025 0.975 24 H 0.011 0.989 25 H 0.062 0.938 26 H 0.258 0.742 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 -3.491 11.343 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.050 0.950 4 C -0.541 4.541 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 C -0.124 4.124 13 H 0.099 0.901 14 C -0.161 4.161 15 H 0.120 0.880 16 C -0.123 4.123 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.124 4.124 21 C -0.185 4.185 22 H 0.116 0.884 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.475 -3.363 11.215 12.534 hybrid contribution 0.173 -0.478 -0.992 1.115 sum 4.648 -3.842 10.223 11.869 Atomic orbital electron populations 1.21701 0.99140 0.98176 0.99497 1.18337 0.91752 0.95575 0.89577 0.94977 1.21141 1.34747 1.07826 0.90405 0.92627 1.24960 0.95615 0.94619 0.98859 1.69967 1.45675 1.14048 1.23433 0.86734 0.78665 0.80239 0.83107 1.20720 1.21489 1.20046 1.22776 0.92873 0.99560 0.97206 0.90106 1.22548 0.95636 0.97096 1.00823 0.87998 1.21237 0.97174 0.96567 0.97371 1.21192 0.98022 1.00986 0.95008 1.21018 0.98951 0.98029 0.96992 1.21187 0.96681 0.98129 0.99183 1.21536 0.96130 1.00588 0.94096 1.23201 1.07607 0.96764 0.90925 0.88390 0.95572 0.96978 0.91886 0.93178 0.92365 0.92222 0.92992 0.91991 0.92846 0.93054 0.93019 0.92005 0.92075 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.05 37.16 0.34 -2.76 16 2 C 0.07 1.66 2.32 -91.77 -0.21 1.45 16 3 H 0.03 0.89 7.86 -51.93 -0.41 0.49 16 4 C -0.50 -13.89 8.14 -34.44 -0.28 -14.17 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 6 C 0.06 1.70 5.17 -17.82 -0.09 1.60 16 7 N -0.89 -26.15 12.16 55.43 0.67 -25.48 16 8 Si 0.88 21.64 29.55 -169.99 -5.02 16.62 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C -0.11 -2.22 4.33 -90.62 -0.39 -2.62 16 13 H 0.08 1.66 8.08 -51.92 -0.42 1.24 16 14 C -0.14 -2.71 4.94 -89.95 -0.44 -3.15 16 15 H 0.10 2.15 8.14 -51.93 -0.42 1.72 16 16 C -0.09 -1.36 5.42 -26.54 -0.14 -1.51 16 17 C -0.11 -1.54 5.59 -27.61 -0.15 -1.69 16 18 C -0.11 -1.37 5.28 -28.17 -0.15 -1.51 16 19 C -0.11 -1.47 5.59 -27.61 -0.15 -1.62 16 20 C -0.09 -1.27 5.44 -25.63 -0.14 -1.41 16 21 C -0.17 -3.01 5.46 -89.05 -0.49 -3.50 16 22 H 0.10 1.85 8.07 -51.93 -0.42 1.43 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 1.68 6.83 -51.93 -0.35 1.32 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.06 0.90 6.17 -51.93 -0.32 0.58 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.87 7.79 -51.93 -0.40 0.47 16 31 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.83 7.78 -51.93 -0.40 0.43 16 35 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -28.13 277.58 -8.86 -36.99 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.38 Total: -1.42 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -2.31 Total: -30.89 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.67 Total: -25.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.13 -8.86 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.355 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds