Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47197 * 2 1 4 4 C 1.50704 * 109.46652 * 239.99881 * 2 1 3 5 5 H 1.08003 * 119.99638 * 245.46264 * 4 2 1 6 6 C 1.37875 * 119.99924 * 65.47028 * 4 2 1 7 7 N 1.31507 * 120.00273 * 9.51014 * 6 4 2 8 8 Si 1.86799 * 119.99515 * 189.50716 * 6 4 2 9 9 H 1.48503 * 109.47005 * 85.00031 * 8 6 4 10 10 H 1.48507 * 109.47085 * 204.99274 * 8 6 4 11 11 H 1.48494 * 109.47419 * 324.99288 * 8 6 4 12 12 C 1.52996 * 109.47237 * 119.99937 * 2 1 3 13 13 H 1.09008 * 115.53120 * 34.41430 * 12 2 1 14 14 C 1.53000 * 117.47160 * 179.97438 * 12 2 1 15 15 H 1.09000 * 118.08962 * 359.63093 * 14 12 2 16 16 C 1.53675 * 117.08087 * 213.56239 * 14 12 2 17 17 C 1.52687 * 108.94668 * 219.22512 * 16 14 12 18 18 C 1.51585 * 111.46837 * 91.04600 * 17 16 14 19 19 C 1.51582 * 113.22018 * 292.77329 * 18 17 16 20 20 C 1.52693 * 111.46997 * 67.24114 * 19 18 17 21 21 C 1.53002 * 117.46861 * 248.88841 * 12 2 1 22 22 H 1.08994 * 118.09245 * 0.36966 * 21 12 2 23 23 H 1.08998 * 109.47631 * 183.56511 * 1 2 3 24 24 H 1.08999 * 109.47212 * 303.56396 * 1 2 3 25 25 H 1.09005 * 109.47693 * 63.56168 * 1 2 3 26 26 H 0.97001 * 120.00589 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.55974 * 339.06712 * 16 14 12 28 28 H 1.09006 * 109.55614 * 99.38940 * 16 14 12 29 29 H 1.09003 * 109.08519 * 211.55584 * 17 16 14 30 30 H 1.09003 * 109.08210 * 330.53374 * 17 16 14 31 31 H 1.08999 * 108.73184 * 53.73535 * 18 17 16 32 32 H 1.08999 * 108.73378 * 171.80388 * 18 17 16 33 33 H 1.09007 * 109.07765 * 187.74520 * 19 18 17 34 34 H 1.08997 * 109.08340 * 306.79152 * 19 18 17 35 35 H 1.08998 * 109.55999 * 28.77455 * 20 19 18 36 36 H 1.08993 * 109.55742 * 148.99494 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5784 -1.6372 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.2986 1.0353 -2.5935 8 14 2.1772 -1.1776 -4.0101 9 1 1.0257 -2.0611 -4.3247 10 1 2.4237 -0.2606 -5.1520 11 1 3.3860 -2.0061 -3.7707 12 6 2.0400 -0.7212 1.2492 13 1 1.4315 -1.5594 1.5891 14 6 3.5551 -0.8282 1.4333 15 1 4.1972 -0.3935 0.6672 16 6 4.0889 -2.0966 2.1173 17 6 5.2368 -1.7123 3.0479 18 6 4.7394 -1.4141 4.4485 19 6 3.8826 -0.1660 4.5253 20 6 2.5592 -0.3502 3.7863 21 6 2.7362 0.1244 2.3175 22 1 2.8306 1.1961 2.1428 23 1 -0.3634 -1.0256 0.0639 24 1 -0.3633 0.5682 0.8563 25 1 -0.3635 0.4576 -0.9202 26 1 1.1310 1.4103 -3.4723 27 1 3.2910 -2.5628 2.6952 28 1 4.4499 -2.7943 1.3615 29 1 5.9511 -2.5345 3.0911 30 1 5.7363 -0.8283 2.6515 31 1 4.1532 -2.2632 4.7999 32 1 5.5995 -1.2895 5.1063 33 1 3.6777 0.0616 5.5715 34 1 4.4258 0.6671 4.0793 35 1 2.2744 -1.4021 3.8045 36 1 1.7853 0.2459 4.2697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = -26.874452 kcal Electronic energy + Delta-G solvation = -14107.496662 eV Core-core repulsion = 11976.181674 eV Total energy + Delta-G solvation = -2131.314989 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31818 -36.68141 -34.66533 -32.59090 -32.01653 -27.31968 -27.02895 -24.79721 -23.33758 -21.56109 -20.41653 -19.74301 -18.13835 -16.85493 -16.36503 -15.93843 -15.23401 -14.79114 -14.39480 -13.93829 -13.70487 -13.63096 -13.26129 -12.91880 -12.78778 -12.74358 -12.62551 -12.26260 -12.06289 -11.78621 -11.45923 -11.41438 -11.32195 -11.10182 -11.04825 -10.45303 -10.05986 -10.01291 -8.10159 -6.17469 1.39502 1.40644 1.49720 2.43436 3.14400 3.20284 3.73065 4.05296 4.07783 4.25095 4.28050 4.37507 4.51440 4.61957 4.69237 4.82803 4.86131 4.86514 4.93846 5.01463 5.10058 5.18763 5.29000 5.33806 5.37789 5.38749 5.43782 5.45803 5.57507 5.63917 5.65652 5.71954 5.97264 6.06457 6.42692 6.94073 7.48463 8.98227 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.008420 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.896373 B = 3324.653197 C = 3734.755663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.064 3.936 3 H -0.006 1.006 4 C -0.515 4.515 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.947 3.053 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.269 1.269 12 C -0.127 4.127 13 H 0.089 0.911 14 C -0.141 4.141 15 H 0.070 0.930 16 C -0.081 4.081 17 C -0.112 4.112 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.080 4.080 21 C -0.149 4.149 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.259 0.741 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.172 -4.921 12.997 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.046 3.954 3 H 0.012 0.988 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.145 4.145 13 H 0.107 0.893 14 C -0.159 4.159 15 H 0.089 0.911 16 C -0.118 4.118 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.167 4.167 22 H 0.100 0.900 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.134 -4.800 12.877 14.671 hybrid contribution -0.031 0.019 -1.514 1.515 sum 5.104 -4.781 11.363 13.343 Atomic orbital electron populations 1.21562 0.98531 0.98717 0.98811 1.18244 0.92310 0.93690 0.91181 0.98828 1.21457 1.34518 1.07683 0.91683 0.93045 1.25736 0.95679 0.95524 1.01920 1.70093 1.46818 1.15478 1.24039 0.85732 0.78753 0.78814 0.79378 1.19971 1.21200 1.19345 1.22549 0.94365 1.00672 0.96923 0.89294 1.22526 0.93794 0.98924 1.00651 0.91116 1.21232 0.98323 0.94600 0.97662 1.21173 0.97245 1.01213 0.95302 1.21019 0.99755 0.97900 0.96205 1.21180 0.95402 0.98311 1.00110 1.21556 0.97875 1.00905 0.91432 1.23236 1.05037 0.95668 0.92737 0.89972 0.94601 0.94998 0.94807 0.93210 0.91430 0.92644 0.91080 0.93120 0.91812 0.90995 0.90637 0.92989 0.91504 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 9.05 71.98 0.65 -5.20 16 2 C 0.06 3.34 2.32 -11.54 -0.03 3.31 16 3 H -0.01 -0.38 7.86 -2.39 -0.02 -0.40 16 4 C -0.52 -29.12 8.14 25.60 0.21 -28.91 16 5 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 6 C 0.01 0.53 5.17 84.66 0.44 0.96 16 7 N -0.92 -55.69 12.16 21.45 0.26 -55.43 16 8 Si 0.95 44.89 29.55 68.60 2.03 46.92 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C -0.13 -5.35 4.33 -10.79 -0.05 -5.40 16 13 H 0.09 3.59 8.08 -2.38 -0.02 3.57 16 14 C -0.14 -5.35 4.94 -10.36 -0.05 -5.40 16 15 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 16 C -0.08 -2.43 5.42 30.72 0.17 -2.26 16 17 C -0.11 -2.72 5.59 30.03 0.17 -2.55 16 18 C -0.11 -2.28 5.28 29.67 0.16 -2.13 16 19 C -0.11 -2.53 5.59 30.03 0.17 -2.36 16 20 C -0.08 -2.17 5.44 31.31 0.17 -2.00 16 21 C -0.15 -5.31 5.46 -9.77 -0.05 -5.37 16 22 H 0.08 3.18 8.07 -2.39 -0.02 3.16 16 23 H 0.03 1.64 8.14 -2.39 -0.02 1.63 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.03 1.83 6.83 -2.38 -0.02 1.81 16 26 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.07 1.91 6.17 -2.39 -0.01 1.90 16 28 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.34 7.79 -2.39 -0.02 1.32 16 31 H 0.06 1.21 7.90 -2.39 -0.02 1.20 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 34 H 0.05 1.28 7.78 -2.39 -0.02 1.26 16 35 H 0.07 1.76 6.16 -2.39 -0.01 1.74 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -61.33 277.58 5.25 -56.08 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.01 Total: 9.73 kcal Atomic # 6 Polarization: -59.25 SS G_CDS: 1.95 Total: -57.30 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.26 Total: -55.43 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.33 5.25 -56.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.205 kcal (2) G-P(sol) polarization free energy of solvation -61.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds