Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47635 * 2 1 4 4 C 1.50697 * 109.47328 * 239.99818 * 2 1 3 5 5 H 1.08002 * 120.00475 * 240.00255 * 4 2 1 6 6 C 1.37883 * 120.00079 * 59.99789 * 4 2 1 7 7 N 1.31517 * 119.99300 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00184 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47548 * 60.00159 * 8 6 4 10 10 H 1.48500 * 109.47381 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47256 * 300.00084 * 8 6 4 12 12 C 1.53005 * 109.47160 * 120.00005 * 2 1 3 13 13 H 1.09002 * 115.55067 * 34.41599 * 12 2 1 14 14 C 1.52999 * 117.51737 * 248.71634 * 12 2 1 15 15 C 1.53005 * 117.49765 * 180.08613 * 12 2 1 16 16 H 1.08992 * 117.49816 * 0.02562 * 15 12 2 17 17 C 1.53002 * 117.49665 * 215.00110 * 15 12 2 18 18 C 1.54260 * 110.03014 * 177.16975 * 17 15 12 19 19 C 1.54894 * 104.19474 * 217.10381 * 18 17 15 20 20 C 1.54893 * 102.74850 * 37.94235 * 19 18 17 21 21 C 1.53869 * 110.03335 * 59.99916 * 17 15 12 22 22 H 1.09007 * 109.47520 * 300.00047 * 1 2 3 23 23 H 1.09004 * 109.47161 * 60.00058 * 1 2 3 24 24 H 1.09002 * 109.47145 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99186 * 179.97438 * 7 6 4 26 26 H 1.09003 * 117.50034 * 0.02562 * 14 12 2 27 27 H 1.08995 * 117.49797 * 145.02727 * 14 12 2 28 28 H 1.09008 * 110.01501 * 298.61213 * 17 15 12 29 29 H 1.08996 * 110.48777 * 335.77818 * 18 17 15 30 30 H 1.09003 * 110.48688 * 98.42929 * 18 17 15 31 31 H 1.09002 * 110.75861 * 279.62931 * 19 18 17 32 32 H 1.09003 * 110.75703 * 156.25444 * 19 18 17 33 33 H 1.08996 * 110.48747 * 203.38391 * 20 19 18 34 34 H 1.09001 * 110.59548 * 80.78657 * 20 19 18 35 35 H 1.08994 * 110.03448 * 238.57052 * 21 17 15 36 36 H 1.08998 * 110.03405 * 359.95165 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6033 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0399 -0.7213 1.2493 13 1 1.4318 -1.5595 1.5894 14 6 2.7399 0.1226 2.3164 15 6 3.5550 -0.8263 1.4353 16 1 4.1883 -0.3813 0.6680 17 6 4.1004 -2.0999 2.0846 18 6 5.6418 -2.0550 2.1230 19 6 6.0713 -3.5180 1.8505 20 6 5.0393 -3.9863 0.7947 21 6 3.7172 -3.3277 1.2401 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7094 1.1617 -3.4844 26 1 2.8369 1.1919 2.1289 27 1 2.5923 -0.1605 3.3586 28 1 3.7038 -2.2030 3.0947 29 1 6.0237 -1.3942 1.3448 30 1 5.9898 -1.7317 3.1041 31 1 5.9956 -4.1182 2.7573 32 1 7.0825 -3.5547 1.4450 33 1 4.9474 -5.0723 0.8065 34 1 5.3226 -3.6389 -0.1989 35 1 3.1355 -4.0271 1.8405 36 1 3.1420 -3.0165 0.3682 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260148585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -24.831468 kcal Electronic energy + Delta-G solvation = -14081.934058 eV Core-core repulsion = 11950.707660 eV Total energy + Delta-G solvation = -2131.226398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98990 -37.51302 -35.09005 -32.02672 -29.47718 -29.16990 -27.16901 -23.97110 -22.69419 -21.62295 -20.73544 -20.08344 -18.21600 -16.75211 -16.55989 -16.16559 -15.29319 -14.91696 -14.42176 -14.13832 -13.74602 -13.23183 -13.00878 -12.79448 -12.75933 -12.39921 -12.27929 -12.13231 -11.89545 -11.85460 -11.82132 -11.45583 -11.29683 -11.13833 -11.11858 -10.43348 -10.38486 -10.07523 -8.04558 -6.16043 1.40368 1.41284 1.48667 2.44099 3.14045 3.22732 3.75196 3.84407 3.94494 4.25537 4.34703 4.37862 4.66541 4.68578 4.77262 4.82169 4.82724 4.92897 4.95678 4.98887 4.99893 5.13223 5.13937 5.18912 5.29991 5.43184 5.44229 5.49590 5.54664 5.60459 5.66517 5.74325 6.01843 6.16111 6.45350 6.95230 7.50875 9.00192 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.027700 B = 0.010648 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.595438 B = 2629.010470 C = 3332.613187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.066 3.934 3 H -0.010 1.010 4 C -0.509 4.509 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.923 5.923 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.130 4.130 13 H 0.088 0.912 14 C -0.179 4.179 15 C -0.131 4.131 16 H 0.075 0.925 17 C -0.054 4.054 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.125 4.125 22 H 0.026 0.974 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.258 0.742 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 -7.450 9.283 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.048 3.952 3 H 0.008 0.992 4 C -0.547 4.547 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.773 3.227 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.148 4.148 13 H 0.106 0.894 14 C -0.215 4.215 15 C -0.149 4.149 16 H 0.093 0.907 17 C -0.072 4.072 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.163 4.163 21 C -0.162 4.162 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.503 -7.339 9.145 13.921 hybrid contribution -0.115 0.082 -1.276 1.283 sum 7.388 -7.257 7.869 13.007 Atomic orbital electron populations 1.21623 0.98552 0.98710 0.99449 1.18237 0.92497 0.93283 0.91179 0.99181 1.21480 1.29988 1.11944 0.91304 0.92686 1.25734 0.95682 0.95843 1.01799 1.70029 1.38329 1.24422 1.23626 0.85781 0.78770 0.78924 0.79237 1.19630 1.21204 1.19840 1.22352 0.94495 1.00784 0.97217 0.89392 1.23180 1.05387 0.96673 0.96308 1.22306 0.93780 0.98007 1.00824 0.90715 1.21321 0.95910 0.91926 0.98051 1.22422 0.93963 0.97289 1.01699 1.22483 0.98448 0.95558 0.98920 1.22361 0.95032 1.00227 0.98686 1.22240 0.97910 0.96547 0.99544 0.95497 0.92863 0.95456 0.93298 0.90586 0.87549 0.90489 0.92836 0.90447 0.90190 0.90904 0.90752 0.93255 0.91471 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.32 8.95 71.98 0.64 -5.67 16 2 C 0.07 3.43 2.46 -11.54 -0.03 3.40 16 3 H -0.01 -0.57 7.90 -2.39 -0.02 -0.59 16 4 C -0.51 -28.36 8.25 25.60 0.21 -28.15 16 5 H 0.05 3.02 6.61 -2.91 -0.02 3.00 16 6 C 0.01 0.38 5.30 84.66 0.45 0.83 16 7 N -0.92 -54.94 11.32 21.45 0.24 -54.69 16 8 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 C -0.13 -5.45 4.16 -10.79 -0.04 -5.50 16 13 H 0.09 3.57 8.11 -2.39 -0.02 3.55 16 14 C -0.18 -6.31 9.83 30.60 0.30 -6.01 16 15 C -0.13 -4.86 4.27 -10.79 -0.05 -4.90 16 16 H 0.07 3.18 7.80 -2.39 -0.02 3.16 16 17 C -0.05 -1.59 3.10 -10.07 -0.03 -1.62 16 18 C -0.12 -2.94 6.36 31.67 0.20 -2.74 16 19 C -0.12 -2.55 6.91 31.89 0.22 -2.33 16 20 C -0.13 -3.28 6.83 31.67 0.22 -3.06 16 21 C -0.12 -3.81 6.25 31.32 0.20 -3.62 16 22 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.05 2.97 6.07 -2.38 -0.01 2.95 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 26 H 0.08 2.80 8.05 -2.39 -0.02 2.78 16 27 H 0.11 3.11 8.06 -2.39 -0.02 3.09 16 28 H 0.08 2.06 7.93 -2.38 -0.02 2.04 16 29 H 0.05 1.50 7.63 -2.39 -0.02 1.48 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.78 6.29 -2.39 -0.02 1.76 16 Total: -1.00 -60.12 282.73 5.57 -54.55 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.01 Total: 12.76 kcal Atomic # 6 Polarization: -61.65 SS G_CDS: 2.29 Total: -59.36 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.24 Total: -54.69 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.12 5.57 -54.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.715 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds