Wall clock time and date at job start Mon Mar 30 2020 02:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 C 1.50702 * 109.47065 * 239.99641 * 2 1 3 5 5 H 1.07999 * 120.00001 * 244.56009 * 4 2 1 6 6 C 1.37881 * 120.00103 * 64.56378 * 4 2 1 7 7 N 1.31519 * 119.99226 * 7.06027 * 6 4 2 8 8 Si 1.86792 * 120.00195 * 187.06367 * 6 4 2 9 9 H 1.48502 * 109.47520 * 94.94837 * 8 6 4 10 10 H 1.48505 * 109.46991 * 214.94801 * 8 6 4 11 11 H 1.48502 * 109.47210 * 334.94517 * 8 6 4 12 12 C 1.52999 * 109.46673 * 120.00155 * 2 1 3 13 13 H 1.08999 * 115.56367 * 34.30842 * 12 2 1 14 14 C 1.52999 * 117.49673 * 248.61644 * 12 2 1 15 15 C 1.52997 * 60.00244 * 252.51267 * 14 12 2 16 16 C 1.53002 * 117.49888 * 252.48640 * 15 14 12 17 17 C 1.52999 * 117.49872 * 107.49194 * 15 14 12 18 18 C 1.53777 * 113.61497 * 65.90034 * 17 15 14 19 19 C 1.53785 * 87.17187 * 139.94080 * 18 17 15 20 20 C 1.53779 * 113.61716 * 163.39852 * 17 15 14 21 21 H 1.08994 * 109.47336 * 294.21585 * 1 2 3 22 22 H 1.09001 * 109.46431 * 54.21117 * 1 2 3 23 23 H 1.08999 * 109.47435 * 174.20859 * 1 2 3 24 24 H 0.97008 * 119.99041 * 180.02562 * 7 6 4 25 25 H 1.09003 * 117.50071 * 145.02056 * 14 12 2 26 26 H 1.09001 * 117.51957 * 359.97438 * 14 12 2 27 27 H 1.08999 * 109.47254 * 273.68642 * 16 15 14 28 28 H 1.09001 * 109.46899 * 33.68923 * 16 15 14 29 29 H 1.09003 * 109.46930 * 153.68240 * 16 15 14 30 30 H 1.09001 * 112.90445 * 294.65092 * 17 15 14 31 31 H 1.09002 * 113.61566 * 254.52848 * 18 17 15 32 32 H 1.09000 * 113.61929 * 25.34972 * 18 17 15 33 33 H 1.09001 * 113.61062 * 89.15989 * 19 18 17 34 34 H 1.09002 * 113.61515 * 220.05748 * 19 18 17 35 35 H 1.09005 * 113.61362 * 334.56771 * 20 17 15 36 36 H 1.09001 * 113.61498 * 105.37606 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5911 -1.6295 -1.1330 6 6 1.7786 -0.1872 -2.4806 7 7 1.2216 0.9986 -2.5963 8 14 2.2258 -1.1624 -4.0097 9 1 1.0392 -1.9238 -4.4760 10 1 2.6680 -0.2313 -5.0788 11 1 3.3260 -2.1072 -3.6901 12 6 2.0399 -0.7213 1.2493 13 1 1.4309 -1.5583 1.5906 14 6 2.7419 0.1225 2.3151 15 6 3.5550 -0.8282 1.4343 16 6 4.0996 -2.1016 2.0845 17 6 4.4441 -0.2057 0.3560 18 6 5.6061 0.6279 0.9214 19 6 6.4796 0.0251 -0.1916 20 6 5.5077 -1.1688 -0.1971 21 1 -0.3634 0.4215 0.9372 22 1 -0.3632 0.6010 -0.8337 23 1 -0.3634 -1.0224 -0.1037 24 1 1.0428 1.3666 -3.4759 25 1 2.5946 -0.1593 3.3577 26 1 2.8410 1.1915 2.1265 27 1 5.0609 -1.8884 2.5520 28 1 3.3974 -2.4522 2.8409 29 1 4.2284 -2.8715 1.3237 30 1 3.8748 0.3079 -0.4188 31 1 5.4586 1.7036 0.8262 32 1 5.9100 0.3294 1.9247 33 1 6.4679 0.6019 -1.1164 34 1 7.4871 -0.2323 0.1351 35 1 5.7855 -1.9595 0.4999 36 1 5.2798 -1.5448 -1.1945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:32 Heat of formation + Delta-G solvation = 22.008598 kcal Electronic energy + Delta-G solvation = -14521.388208 eV Core-core repulsion = 12392.192947 eV Total energy + Delta-G solvation = -2129.195261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.17485 -36.05289 -33.24952 -30.30483 -27.71936 -25.47332 -24.90782 -24.42710 -22.06225 -19.82937 -19.09207 -17.37762 -16.13215 -15.01884 -14.84244 -14.13978 -13.65927 -12.86803 -12.71566 -12.51371 -12.15414 -11.74962 -11.59766 -11.32855 -11.07026 -10.86568 -10.81068 -10.73366 -10.34010 -10.19096 -9.89495 -9.76301 -9.63538 -9.21102 -9.02450 -8.59398 -8.27045 -8.19489 -5.93875 -3.92596 3.33638 3.41478 3.44364 4.46901 4.66714 5.29588 5.34214 5.37572 5.39844 5.59957 5.69393 5.83594 5.93751 5.98967 6.16151 6.26358 6.34548 6.37295 6.42091 6.49715 6.59822 6.66031 6.73679 6.80485 6.90368 6.94026 6.97994 7.11971 7.32324 7.41523 7.57496 7.81616 8.06085 8.10714 8.55489 9.10020 9.68019 11.14896 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.013862 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.170840 B = 2019.452143 C = 2615.517959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.068 3.932 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.880 3.120 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.273 1.273 12 C -0.111 4.111 13 H 0.080 0.920 14 C -0.190 4.190 15 C -0.110 4.110 16 C -0.107 4.107 17 C -0.063 4.063 18 C -0.140 4.140 19 C -0.143 4.143 20 C -0.137 4.137 21 H 0.009 0.991 22 H 0.064 0.936 23 H 0.027 0.973 24 H 0.258 0.742 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -2.472 6.357 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.708 3.292 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.198 1.198 12 C -0.129 4.129 13 H 0.098 0.902 14 C -0.227 4.227 15 C -0.110 4.110 16 C -0.164 4.164 17 C -0.081 4.081 18 C -0.177 4.177 19 C -0.181 4.181 20 C -0.174 4.174 21 H 0.028 0.972 22 H 0.083 0.917 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.059 -2.347 6.220 8.995 hybrid contribution 0.168 -0.534 -0.864 1.030 sum 6.227 -2.881 5.356 8.704 Atomic orbital electron populations 1.21715 0.99152 0.99316 0.98496 1.18334 0.91691 0.95413 0.89571 0.95009 1.21115 1.33504 1.08446 0.90055 0.92400 1.24938 0.95687 0.94699 0.98711 1.69961 1.44214 1.15752 1.23235 0.86760 0.78650 0.80202 0.83539 1.20959 1.21508 1.19826 1.22717 0.92636 0.99832 0.97761 0.90158 1.23088 1.07088 0.97347 0.95133 1.21203 0.94088 0.96511 0.99173 1.21279 0.99529 0.96411 0.99207 1.22280 0.92731 0.95998 0.97081 1.22945 0.97949 0.99261 0.97548 1.22801 0.97072 0.98891 0.99310 1.22986 0.96767 0.96446 1.01214 0.97176 0.91732 0.95364 0.93248 0.90798 0.89697 0.93409 0.93660 0.92478 0.85248 0.92475 0.91318 0.90657 0.92737 0.90878 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.93 37.16 0.33 -2.76 16 2 C 0.07 1.67 1.64 -91.77 -0.15 1.52 16 3 H 0.03 0.86 7.55 -51.93 -0.39 0.47 16 4 C -0.49 -12.96 5.95 -34.44 -0.20 -13.16 16 5 H 0.06 1.54 7.58 -52.49 -0.40 1.14 16 6 C 0.06 1.64 5.26 -17.82 -0.09 1.54 16 7 N -0.89 -25.39 12.03 55.43 0.67 -24.72 16 8 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.11 -2.32 4.81 -90.62 -0.44 -2.76 16 13 H 0.08 1.65 8.11 -51.93 -0.42 1.23 16 14 C -0.19 -3.48 9.52 -26.73 -0.25 -3.74 16 15 C -0.11 -2.05 2.05 -154.51 -0.32 -2.37 16 16 C -0.11 -1.72 8.22 37.16 0.31 -1.41 16 17 C -0.06 -1.22 2.86 -89.81 -0.26 -1.48 16 18 C -0.14 -2.31 7.56 -25.92 -0.20 -2.51 16 19 C -0.14 -2.27 8.10 -25.83 -0.21 -2.47 16 20 C -0.14 -2.40 7.19 -25.83 -0.19 -2.59 16 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 22 H 0.06 1.69 6.87 -51.93 -0.36 1.33 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 1.60 8.05 -51.93 -0.42 1.19 16 27 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 28 H 0.04 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.06 0.92 7.28 -51.93 -0.38 0.54 16 30 H 0.13 3.03 5.14 -51.93 -0.27 2.76 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.17 5.98 -51.93 -0.31 0.86 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 281.04 15.07 4.24 4.24 Total: -1.00 -26.91 281.04 -8.08 -34.99 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.29 Total: 1.48 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: -1.67 Total: -32.18 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.67 Total: -24.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.91 -8.08 -34.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.998 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds