Wall clock time and date at job start Mon Mar 30 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 C 1.50702 * 109.47065 * 239.99641 * 2 1 3 5 5 H 1.07999 * 120.00001 * 244.56009 * 4 2 1 6 6 C 1.37881 * 120.00103 * 64.56378 * 4 2 1 7 7 N 1.31519 * 119.99226 * 7.06027 * 6 4 2 8 8 Si 1.86792 * 120.00195 * 187.06367 * 6 4 2 9 9 H 1.48502 * 109.47520 * 94.94837 * 8 6 4 10 10 H 1.48505 * 109.46991 * 214.94801 * 8 6 4 11 11 H 1.48502 * 109.47210 * 334.94517 * 8 6 4 12 12 C 1.52999 * 109.46673 * 120.00155 * 2 1 3 13 13 H 1.08999 * 115.56367 * 34.30842 * 12 2 1 14 14 C 1.52999 * 117.49673 * 248.61644 * 12 2 1 15 15 C 1.52997 * 60.00244 * 252.51267 * 14 12 2 16 16 C 1.53002 * 117.49888 * 252.48640 * 15 14 12 17 17 C 1.52999 * 117.49872 * 107.49194 * 15 14 12 18 18 C 1.53777 * 113.61497 * 65.90034 * 17 15 14 19 19 C 1.53785 * 87.17187 * 139.94080 * 18 17 15 20 20 C 1.53779 * 113.61716 * 163.39852 * 17 15 14 21 21 H 1.08994 * 109.47336 * 294.21585 * 1 2 3 22 22 H 1.09001 * 109.46431 * 54.21117 * 1 2 3 23 23 H 1.08999 * 109.47435 * 174.20859 * 1 2 3 24 24 H 0.97008 * 119.99041 * 180.02562 * 7 6 4 25 25 H 1.09003 * 117.50071 * 145.02056 * 14 12 2 26 26 H 1.09001 * 117.51957 * 359.97438 * 14 12 2 27 27 H 1.08999 * 109.47254 * 273.68642 * 16 15 14 28 28 H 1.09001 * 109.46899 * 33.68923 * 16 15 14 29 29 H 1.09003 * 109.46930 * 153.68240 * 16 15 14 30 30 H 1.09001 * 112.90445 * 294.65092 * 17 15 14 31 31 H 1.09002 * 113.61566 * 254.52848 * 18 17 15 32 32 H 1.09000 * 113.61929 * 25.34972 * 18 17 15 33 33 H 1.09001 * 113.61062 * 89.15989 * 19 18 17 34 34 H 1.09002 * 113.61515 * 220.05748 * 19 18 17 35 35 H 1.09005 * 113.61362 * 334.56771 * 20 17 15 36 36 H 1.09001 * 113.61498 * 105.37606 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5911 -1.6295 -1.1330 6 6 1.7786 -0.1872 -2.4806 7 7 1.2216 0.9986 -2.5963 8 14 2.2258 -1.1624 -4.0097 9 1 1.0392 -1.9238 -4.4760 10 1 2.6680 -0.2313 -5.0788 11 1 3.3260 -2.1072 -3.6901 12 6 2.0399 -0.7213 1.2493 13 1 1.4309 -1.5583 1.5906 14 6 2.7419 0.1225 2.3151 15 6 3.5550 -0.8282 1.4343 16 6 4.0996 -2.1016 2.0845 17 6 4.4441 -0.2057 0.3560 18 6 5.6061 0.6279 0.9214 19 6 6.4796 0.0251 -0.1916 20 6 5.5077 -1.1688 -0.1971 21 1 -0.3634 0.4215 0.9372 22 1 -0.3632 0.6010 -0.8337 23 1 -0.3634 -1.0224 -0.1037 24 1 1.0428 1.3666 -3.4759 25 1 2.5946 -0.1593 3.3577 26 1 2.8410 1.1915 2.1265 27 1 5.0609 -1.8884 2.5520 28 1 3.3974 -2.4522 2.8409 29 1 4.2284 -2.8715 1.3237 30 1 3.8748 0.3079 -0.4188 31 1 5.4586 1.7036 0.8262 32 1 5.9100 0.3294 1.9247 33 1 6.4679 0.6019 -1.1164 34 1 7.4871 -0.2323 0.1351 35 1 5.7855 -1.9595 0.4999 36 1 5.2798 -1.5448 -1.1945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229173.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:31 Heat of formation + Delta-G solvation = 9.842781 kcal Electronic energy + Delta-G solvation = -14521.915757 eV Core-core repulsion = 12392.192947 eV Total energy + Delta-G solvation = -2129.722810 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.65361 -37.58821 -35.18505 -32.22931 -29.13643 -27.35149 -26.32945 -25.97522 -23.85564 -21.34615 -20.70233 -18.85244 -18.19034 -16.72247 -16.42724 -15.82700 -15.19929 -14.56888 -14.32187 -14.00485 -13.66178 -13.41799 -13.15163 -12.95373 -12.78175 -12.64042 -12.48727 -12.24092 -12.22159 -12.03961 -11.44358 -11.31723 -11.14755 -10.90100 -10.79883 -10.41452 -10.17189 -9.82095 -8.03919 -6.06908 1.38897 1.41684 1.50123 2.46412 3.14005 3.26761 3.92323 3.96753 4.01561 4.18050 4.28132 4.38134 4.49055 4.63911 4.83250 4.90307 4.93770 4.98731 5.00516 5.07173 5.08034 5.15968 5.18183 5.26368 5.28884 5.40320 5.41896 5.51335 5.58707 5.70821 5.75933 6.00558 6.04275 6.12888 6.49580 7.01018 7.55816 9.04526 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.025561 B = 0.013862 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.170840 B = 2019.452143 C = 2615.517959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.071 3.929 3 H -0.004 1.004 4 C -0.486 4.486 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.934 3.066 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.266 1.266 12 C -0.138 4.138 13 H 0.086 0.914 14 C -0.172 4.172 15 C -0.102 4.102 16 C -0.103 4.103 17 C -0.080 4.080 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.135 4.135 21 H 0.030 0.970 22 H 0.035 0.965 23 H 0.030 0.970 24 H 0.256 0.744 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 -3.803 7.908 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 H 0.014 0.986 4 C -0.524 4.524 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.761 3.239 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.191 1.191 12 C -0.157 4.157 13 H 0.104 0.896 14 C -0.209 4.209 15 C -0.102 4.102 16 C -0.160 4.160 17 C -0.098 4.098 18 C -0.166 4.166 19 C -0.172 4.172 20 C -0.172 4.172 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.595 -3.688 7.774 11.477 hybrid contribution -0.325 -0.086 -1.326 1.368 sum 7.270 -3.775 6.448 10.425 Atomic orbital electron populations 1.21598 0.99011 0.98963 0.98377 1.18191 0.91784 0.93702 0.91096 0.98566 1.21293 1.32380 1.07804 0.90921 0.92960 1.25588 0.96136 0.95465 1.01369 1.70083 1.45870 1.17156 1.23505 0.85897 0.78515 0.79008 0.80476 1.20679 1.21607 1.19072 1.22521 0.94763 1.00918 0.97452 0.89559 1.23090 1.05338 0.96527 0.95946 1.21353 0.92311 0.97755 0.98814 1.21279 1.00887 0.94517 0.99337 1.22142 0.93598 0.97300 0.96740 1.22897 0.96385 0.98515 0.98813 1.22756 0.98247 0.97532 0.98690 1.23013 0.96589 0.97255 1.00336 0.95077 0.94577 0.95095 0.93533 0.87877 0.90896 0.91093 0.92339 0.92740 0.90158 0.93147 0.89057 0.91728 0.89715 0.88559 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.93 71.98 0.64 -5.30 16 2 C 0.07 3.54 1.64 -11.54 -0.02 3.52 16 3 H 0.00 -0.21 7.55 -2.39 -0.02 -0.23 16 4 C -0.49 -26.10 5.95 25.60 0.15 -25.95 16 5 H 0.05 2.81 7.58 -2.91 -0.02 2.79 16 6 C 0.01 0.65 5.26 84.65 0.45 1.09 16 7 N -0.93 -54.54 12.03 21.45 0.26 -54.29 16 8 Si 0.93 44.31 29.54 68.60 2.03 46.34 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C -0.14 -5.67 4.81 -10.79 -0.05 -5.72 16 13 H 0.09 3.41 8.11 -2.39 -0.02 3.39 16 14 C -0.17 -5.99 9.52 30.59 0.29 -5.70 16 15 C -0.10 -3.63 2.05 -52.18 -0.11 -3.74 16 16 C -0.10 -2.92 8.22 71.98 0.59 -2.33 16 17 C -0.08 -3.02 2.86 -10.27 -0.03 -3.05 16 18 C -0.13 -4.00 7.56 31.12 0.24 -3.76 16 19 C -0.13 -3.97 8.10 31.18 0.25 -3.72 16 20 C -0.13 -4.49 7.19 31.18 0.22 -4.27 16 21 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.04 1.93 6.87 -2.39 -0.02 1.91 16 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 25 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 27 H 0.07 1.70 7.98 -2.39 -0.02 1.68 16 28 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 29 H 0.05 1.57 7.28 -2.39 -0.02 1.55 16 30 H 0.08 3.89 5.14 -2.39 -0.01 3.88 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 2.44 8.10 -2.39 -0.02 2.42 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.75 5.98 -2.38 -0.01 2.74 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -58.90 281.04 5.93 -52.97 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.02 Total: 13.89 kcal Atomic # 6 Polarization: -61.55 SS G_CDS: 2.63 Total: -58.92 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.26 Total: -54.29 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -58.90 5.93 -52.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229173.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.817 kcal (2) G-P(sol) polarization free energy of solvation -58.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds