Wall clock time and date at job start Mon Mar 30 2020 02:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47232 * 2 1 4 4 C 1.50709 * 109.46669 * 240.00161 * 2 1 3 5 5 H 1.07996 * 119.99918 * 266.37976 * 4 2 1 6 6 C 1.37872 * 119.99596 * 86.38340 * 4 2 1 7 7 N 1.31514 * 120.00554 * 1.64403 * 6 4 2 8 8 Si 1.86801 * 119.99912 * 181.64573 * 6 4 2 9 9 H 1.48502 * 109.47076 * 270.00003 * 8 6 4 10 10 H 1.48504 * 109.47182 * 29.99720 * 8 6 4 11 11 H 1.48498 * 109.47186 * 150.00014 * 8 6 4 12 12 C 1.53001 * 109.47087 * 120.00886 * 2 1 3 13 13 H 1.08998 * 115.55366 * 41.04053 * 12 2 1 14 14 C 1.53039 * 117.50169 * 255.30139 * 12 2 1 15 15 C 1.52809 * 59.96236 * 252.52585 * 14 12 2 16 16 C 1.53157 * 117.74772 * 107.63273 * 15 14 12 17 17 C 1.53179 * 108.88178 * 199.61357 * 16 15 14 18 18 C 1.52937 * 109.45770 * 303.44098 * 17 16 15 19 19 C 1.52942 * 109.82261 * 62.97761 * 18 17 16 20 20 C 1.53149 * 117.74695 * 252.36847 * 15 14 12 21 21 H 1.09002 * 109.47052 * 295.21105 * 1 2 3 22 22 H 1.09004 * 109.47054 * 55.20919 * 1 2 3 23 23 H 1.09001 * 109.47337 * 175.21389 * 1 2 3 24 24 H 0.97000 * 119.99775 * 354.67557 * 7 6 4 25 25 H 1.08999 * 117.50150 * 0.02562 * 14 12 2 26 26 H 1.08995 * 117.50737 * 145.04576 * 14 12 2 27 27 H 1.08997 * 109.57160 * 319.43533 * 16 15 14 28 28 H 1.09003 * 109.56998 * 79.80124 * 16 15 14 29 29 H 1.09005 * 109.47394 * 183.44061 * 17 16 15 30 30 H 1.09007 * 109.47309 * 63.43171 * 17 16 15 31 31 H 1.09006 * 109.40978 * 302.87186 * 18 17 16 32 32 H 1.08999 * 109.35929 * 183.05554 * 18 17 16 33 33 H 1.09008 * 109.47367 * 177.02491 * 19 18 17 34 34 H 1.08997 * 109.47519 * 57.01129 * 19 18 17 35 35 H 1.09005 * 109.56746 * 280.19493 * 20 15 14 36 36 H 1.08991 * 109.57366 * 40.43628 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.2679 -1.7635 -1.1878 6 6 2.1909 -0.0159 -2.4110 7 7 1.9350 1.2734 -2.4549 8 14 2.7695 -0.9061 -3.9479 9 1 4.2525 -0.8663 -4.0143 10 1 2.3137 -2.3187 -3.9030 11 1 2.2024 -0.2409 -5.1483 12 6 2.0400 -0.7214 1.2491 13 1 1.4974 -1.6259 1.5242 14 6 2.6003 0.1398 2.3834 15 6 3.5445 -0.6920 1.5164 16 6 4.4310 0.0508 0.5124 17 6 4.9080 -0.9389 -0.5549 18 6 5.6337 -2.1044 0.1190 19 6 4.6646 -2.8636 1.0265 20 6 4.1799 -1.9357 2.1448 21 1 -0.3633 0.4377 0.9298 22 1 -0.3633 0.5864 -0.8440 23 1 -0.3634 -1.0241 -0.0857 24 1 1.5613 1.7204 -1.6794 25 1 2.6051 1.2202 2.2397 26 1 2.4262 -0.1979 3.4050 27 1 3.8583 0.8490 0.0402 28 1 5.2926 0.4737 1.0291 29 1 5.5891 -0.4341 -1.2401 30 1 4.0492 -1.3174 -1.1093 31 1 6.4618 -1.7198 0.7144 32 1 6.0195 -2.7798 -0.6446 33 1 5.1731 -3.7235 1.4626 34 1 3.8104 -3.2046 0.4415 35 1 5.0255 -1.6396 2.7657 36 1 3.4413 -2.4534 2.7568 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260268942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:26 Heat of formation + Delta-G solvation = -12.776055 kcal Electronic energy + Delta-G solvation = -14821.792783 eV Core-core repulsion = 12691.089147 eV Total energy + Delta-G solvation = -2130.703636 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.00256 -34.91974 -33.29345 -30.14908 -29.92204 -26.52774 -24.77157 -22.45094 -21.85423 -20.34529 -19.70362 -17.70779 -16.30006 -14.92984 -14.21143 -13.92358 -13.59664 -13.41762 -12.94588 -12.73464 -12.07619 -11.67408 -11.54756 -11.21255 -11.05375 -11.01104 -10.73641 -10.56357 -10.41136 -10.24313 -10.10950 -9.79923 -9.55054 -9.05820 -9.02574 -8.54033 -8.25146 -8.11746 -6.24827 -3.91023 3.45266 3.48047 3.62294 4.52048 4.65438 5.27747 5.39989 5.46680 5.53629 5.73821 5.78848 5.88336 6.05317 6.10245 6.22020 6.27802 6.32305 6.41584 6.50675 6.56860 6.57687 6.65058 6.71519 6.75730 6.81353 6.96391 7.05010 7.11117 7.15715 7.36665 7.47368 7.63326 7.75197 8.34445 8.53056 8.96669 9.74138 11.12805 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.015730 C = 0.011577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.059276 B = 1779.578216 C = 2417.933031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 H 0.033 0.967 4 C -0.565 4.565 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.918 5.918 8 Si 1.052 2.948 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.287 1.287 12 C -0.103 4.103 13 H 0.080 0.920 14 C -0.199 4.199 15 C -0.109 4.109 16 C -0.060 4.060 17 C -0.133 4.133 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.075 4.075 21 H 0.016 0.984 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.270 0.730 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -4.872 6.306 8.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.051 0.949 4 C -0.604 4.604 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.881 3.119 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.213 1.213 12 C -0.121 4.121 13 H 0.098 0.902 14 C -0.236 4.236 15 C -0.109 4.109 16 C -0.097 4.097 17 C -0.170 4.170 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.113 4.113 21 H 0.035 0.965 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.568 -4.644 4.711 8.039 hybrid contribution -0.445 -0.251 1.710 1.785 sum 4.123 -4.895 6.421 9.066 Atomic orbital electron populations 1.21885 0.99787 0.99490 0.97885 1.18543 0.91033 0.95825 0.91370 0.94895 1.21732 1.46658 0.97080 0.94886 0.93168 1.25558 0.95749 0.96014 1.00792 1.70744 1.41619 1.09135 1.33962 0.83802 0.76779 0.75003 0.76309 1.21215 1.21458 1.21259 1.22506 0.94107 0.99146 0.96374 0.90211 1.23123 1.07232 0.97864 0.95354 1.21304 0.92636 0.97192 0.99793 1.20836 0.96504 0.97811 0.94561 1.21926 1.01703 0.95439 0.97884 1.21491 0.97588 0.98045 0.98111 1.21449 0.99371 0.96968 0.97132 1.21059 0.98927 0.94701 0.96595 0.96505 0.93954 0.94516 0.91883 0.89881 0.90654 0.90801 0.94709 0.93888 0.86948 0.93546 0.93224 0.93432 0.91608 0.92864 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.17 37.16 0.34 -2.67 16 2 C 0.05 1.21 1.40 -91.77 -0.13 1.09 16 3 H 0.03 0.86 5.50 -51.93 -0.29 0.57 16 4 C -0.57 -14.58 4.79 -34.44 -0.17 -14.74 16 5 H 0.05 1.33 7.01 -52.49 -0.37 0.96 16 6 C 0.02 0.61 5.32 -17.82 -0.09 0.51 16 7 N -0.92 -26.63 13.61 55.43 0.75 -25.87 16 8 Si 1.05 24.67 29.39 -169.99 -5.00 19.68 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C -0.10 -2.15 4.74 -90.68 -0.43 -2.58 16 13 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 14 C -0.20 -3.69 9.64 -26.81 -0.26 -3.95 16 15 C -0.11 -2.09 1.90 -154.53 -0.29 -2.39 16 16 C -0.06 -1.22 4.91 -26.56 -0.13 -1.36 16 17 C -0.13 -2.69 5.67 -26.67 -0.15 -2.84 16 18 C -0.11 -1.95 5.82 -26.79 -0.16 -2.10 16 19 C -0.11 -1.83 5.93 -26.67 -0.16 -1.99 16 20 C -0.08 -1.25 5.67 -26.56 -0.15 -1.40 16 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.27 7.83 6.63 -40.82 -0.27 7.56 16 25 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.74 6.17 -51.93 -0.32 1.42 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.11 2.57 3.79 -51.93 -0.20 2.38 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 LS Contribution 272.24 15.07 4.10 4.10 Total: -1.00 -26.91 272.24 -8.06 -34.98 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.15 Total: 1.54 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: -1.78 Total: -34.43 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.75 Total: -25.87 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.00 Total: 19.68 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.91 -8.06 -34.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.200 kcal (2) G-P(sol) polarization free energy of solvation -26.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds