Wall clock time and date at job start Mon Mar 30 2020 02:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47232 * 2 1 4 4 C 1.50709 * 109.46669 * 240.00161 * 2 1 3 5 5 H 1.07996 * 119.99918 * 266.37976 * 4 2 1 6 6 C 1.37872 * 119.99596 * 86.38340 * 4 2 1 7 7 N 1.31514 * 120.00554 * 1.64403 * 6 4 2 8 8 Si 1.86801 * 119.99912 * 181.64573 * 6 4 2 9 9 H 1.48502 * 109.47076 * 270.00003 * 8 6 4 10 10 H 1.48504 * 109.47182 * 29.99720 * 8 6 4 11 11 H 1.48498 * 109.47186 * 150.00014 * 8 6 4 12 12 C 1.53001 * 109.47087 * 120.00886 * 2 1 3 13 13 H 1.08998 * 115.55366 * 41.04053 * 12 2 1 14 14 C 1.53039 * 117.50169 * 255.30139 * 12 2 1 15 15 C 1.52809 * 59.96236 * 252.52585 * 14 12 2 16 16 C 1.53157 * 117.74772 * 107.63273 * 15 14 12 17 17 C 1.53179 * 108.88178 * 199.61357 * 16 15 14 18 18 C 1.52937 * 109.45770 * 303.44098 * 17 16 15 19 19 C 1.52942 * 109.82261 * 62.97761 * 18 17 16 20 20 C 1.53149 * 117.74695 * 252.36847 * 15 14 12 21 21 H 1.09002 * 109.47052 * 295.21105 * 1 2 3 22 22 H 1.09004 * 109.47054 * 55.20919 * 1 2 3 23 23 H 1.09001 * 109.47337 * 175.21389 * 1 2 3 24 24 H 0.97000 * 119.99775 * 354.67557 * 7 6 4 25 25 H 1.08999 * 117.50150 * 0.02562 * 14 12 2 26 26 H 1.08995 * 117.50737 * 145.04576 * 14 12 2 27 27 H 1.08997 * 109.57160 * 319.43533 * 16 15 14 28 28 H 1.09003 * 109.56998 * 79.80124 * 16 15 14 29 29 H 1.09005 * 109.47394 * 183.44061 * 17 16 15 30 30 H 1.09007 * 109.47309 * 63.43171 * 17 16 15 31 31 H 1.09006 * 109.40978 * 302.87186 * 18 17 16 32 32 H 1.08999 * 109.35929 * 183.05554 * 18 17 16 33 33 H 1.09008 * 109.47367 * 177.02491 * 19 18 17 34 34 H 1.08997 * 109.47519 * 57.01129 * 19 18 17 35 35 H 1.09005 * 109.56746 * 280.19493 * 20 15 14 36 36 H 1.08991 * 109.57366 * 40.43628 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.2679 -1.7635 -1.1878 6 6 2.1909 -0.0159 -2.4110 7 7 1.9350 1.2734 -2.4549 8 14 2.7695 -0.9061 -3.9479 9 1 4.2525 -0.8663 -4.0143 10 1 2.3137 -2.3187 -3.9030 11 1 2.2024 -0.2409 -5.1483 12 6 2.0400 -0.7214 1.2491 13 1 1.4974 -1.6259 1.5242 14 6 2.6003 0.1398 2.3834 15 6 3.5445 -0.6920 1.5164 16 6 4.4310 0.0508 0.5124 17 6 4.9080 -0.9389 -0.5549 18 6 5.6337 -2.1044 0.1190 19 6 4.6646 -2.8636 1.0265 20 6 4.1799 -1.9357 2.1448 21 1 -0.3633 0.4377 0.9298 22 1 -0.3633 0.5864 -0.8440 23 1 -0.3634 -1.0241 -0.0857 24 1 1.5613 1.7204 -1.6794 25 1 2.6051 1.2202 2.2397 26 1 2.4262 -0.1979 3.4050 27 1 3.8583 0.8490 0.0402 28 1 5.2926 0.4737 1.0291 29 1 5.5891 -0.4341 -1.2401 30 1 4.0492 -1.3174 -1.1093 31 1 6.4618 -1.7198 0.7144 32 1 6.0195 -2.7798 -0.6446 33 1 5.1731 -3.7235 1.4626 34 1 3.8104 -3.2046 0.4415 35 1 5.0255 -1.6396 2.7657 36 1 3.4413 -2.4534 2.7568 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260268942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:25 Heat of formation + Delta-G solvation = -25.199383 kcal Electronic energy + Delta-G solvation = -14822.331499 eV Core-core repulsion = 12691.089147 eV Total energy + Delta-G solvation = -2131.242352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.56102 -36.56536 -35.11355 -31.91759 -31.54218 -28.00441 -26.80649 -24.17561 -23.41802 -21.78640 -21.39804 -19.40291 -18.19224 -16.47390 -15.87546 -15.55850 -15.45829 -15.02794 -14.43291 -14.35718 -13.63859 -13.37326 -13.09588 -13.07187 -12.87303 -12.57231 -12.48621 -12.27981 -11.98807 -11.84394 -11.76494 -11.45967 -11.19123 -10.71802 -10.67671 -10.38665 -10.08788 -9.94852 -8.40847 -6.05084 1.52723 1.59442 1.74212 2.61023 3.07676 3.37801 3.81563 4.00987 4.10654 4.21212 4.33609 4.43439 4.59901 4.67211 4.70755 4.76239 4.80521 4.87510 4.91998 4.99455 5.06046 5.10228 5.11394 5.22600 5.24657 5.39597 5.47803 5.50308 5.54793 5.58840 5.74015 5.90035 5.97592 6.27835 6.40713 6.83494 7.65875 8.97395 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.015730 C = 0.011577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.059276 B = 1779.578216 C = 2417.933031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.048 3.952 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.044 0.956 6 C -0.022 4.022 7 N -0.950 5.950 8 Si 1.084 2.916 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.293 1.293 12 C -0.124 4.124 13 H 0.086 0.914 14 C -0.182 4.182 15 C -0.106 4.106 16 C -0.059 4.059 17 C -0.135 4.135 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.072 4.072 21 H 0.038 0.962 22 H 0.018 0.982 23 H 0.041 0.959 24 H 0.256 0.744 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.266 -6.750 7.957 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.030 3.970 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.062 0.938 6 C -0.220 4.220 7 N -0.590 5.590 8 Si 0.909 3.091 9 H -0.200 1.200 10 H -0.196 1.196 11 H -0.219 1.219 12 C -0.142 4.142 13 H 0.104 0.896 14 C -0.219 4.219 15 C -0.106 4.106 16 C -0.096 4.096 17 C -0.172 4.172 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.109 4.109 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.702 -6.540 6.378 10.768 hybrid contribution -0.806 0.358 1.230 1.513 sum 4.896 -6.182 7.608 10.957 Atomic orbital electron populations 1.21763 0.99012 0.99480 0.98016 1.18477 0.91639 0.94358 0.92554 0.97897 1.21876 1.44733 0.96554 0.95443 0.93781 1.26578 0.95959 0.95892 1.03536 1.70852 1.44214 1.10327 1.33592 0.83377 0.77153 0.75012 0.73545 1.20000 1.19562 1.21921 1.22322 0.95857 0.99857 0.96172 0.89571 1.23146 1.05575 0.97075 0.96084 1.21417 0.91402 0.98399 0.99413 1.20764 0.96836 0.96952 0.95077 1.21852 1.00810 0.96716 0.97806 1.21453 0.97855 0.96799 0.98646 1.21450 0.98676 0.97889 0.96758 1.21097 0.99825 0.93189 0.96803 0.94308 0.96313 0.93998 0.93297 0.90988 0.87603 0.95130 0.93021 0.94794 0.89819 0.91688 0.92064 0.90210 0.93725 0.90789 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 9.17 71.98 0.66 -5.06 16 2 C 0.05 2.35 1.40 -11.54 -0.02 2.33 16 3 H 0.00 0.16 5.50 -2.39 -0.01 0.15 16 4 C -0.55 -28.73 4.79 25.60 0.12 -28.61 16 5 H 0.04 2.34 7.01 -2.91 -0.02 2.32 16 6 C -0.02 -1.23 5.32 84.65 0.45 -0.78 16 7 N -0.95 -57.32 13.61 21.45 0.29 -57.03 16 8 Si 1.08 50.22 29.39 68.60 2.02 52.23 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 12 C -0.12 -5.02 4.74 -10.83 -0.05 -5.07 16 13 H 0.09 3.38 8.14 -2.39 -0.02 3.37 16 14 C -0.18 -6.38 9.64 30.54 0.29 -6.09 16 15 C -0.11 -3.87 1.90 -52.20 -0.10 -3.97 16 16 C -0.06 -2.38 4.91 30.71 0.15 -2.23 16 17 C -0.13 -5.37 5.67 30.63 0.17 -5.19 16 18 C -0.11 -3.41 5.82 30.55 0.18 -3.23 16 19 C -0.11 -3.21 5.93 30.64 0.18 -3.03 16 20 C -0.07 -2.10 5.67 30.70 0.17 -1.92 16 21 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.02 0.90 8.09 -2.38 -0.02 0.88 16 23 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.26 15.72 6.63 -92.71 -0.61 15.10 16 25 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 26 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.03 1.48 6.17 -2.39 -0.01 1.47 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.08 3.83 3.79 -2.38 -0.01 3.82 16 31 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 Total: -1.00 -58.96 272.24 5.70 -53.26 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.18 Total: 14.40 kcal Atomic # 6 Polarization: -65.07 SS G_CDS: 2.22 Total: -62.86 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.29 Total: -57.03 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.02 Total: 52.23 kcal Total: -58.96 5.70 -53.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.058 kcal (2) G-P(sol) polarization free energy of solvation -58.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds