Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48500 * 109.46721 * 239.99342 * 3 2 1 5 5 H 1.48492 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46769 * 119.99385 * 3 2 1 7 7 C 1.37871 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00245 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.45787 * 180.02562 * 9 7 2 11 11 C 1.53066 * 109.43328 * 179.67885 * 10 9 7 12 12 C 1.52681 * 109.48160 * 59.43236 * 11 10 9 13 13 C 1.53981 * 109.80327 * 179.66765 * 12 11 10 14 14 C 1.54954 * 104.13229 * 217.33346 * 13 12 11 15 15 C 1.54910 * 102.78795 * 37.69912 * 14 13 12 16 16 C 1.53615 * 109.96776 * 62.32774 * 12 11 10 17 17 C 1.52676 * 110.34353 * 300.84046 * 12 11 10 18 18 C 1.53002 * 109.46166 * 59.92666 * 9 7 2 19 19 H 0.96999 * 119.99525 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.44765 * 299.95637 * 9 7 2 21 21 H 1.08998 * 109.48000 * 59.68654 * 10 9 7 22 22 H 1.09002 * 109.47524 * 299.66309 * 10 9 7 23 23 H 1.09004 * 109.46686 * 179.43622 * 11 10 9 24 24 H 1.09003 * 109.47008 * 299.42753 * 11 10 9 25 25 H 1.08999 * 110.50263 * 335.99570 * 13 12 11 26 26 H 1.08999 * 110.49503 * 98.67069 * 13 12 11 27 27 H 1.08999 * 110.74844 * 279.37279 * 14 13 12 28 28 H 1.09006 * 110.90420 * 156.09712 * 14 13 12 29 29 H 1.08997 * 110.48872 * 203.52501 * 15 14 13 30 30 H 1.09003 * 110.59820 * 80.93845 * 15 14 13 31 31 H 1.09005 * 110.05122 * 238.30019 * 16 12 11 32 32 H 1.08994 * 110.05818 * 359.73634 * 16 12 11 33 33 H 1.08998 * 109.47172 * 179.16493 * 17 12 11 34 34 H 1.09004 * 109.46986 * 299.15704 * 17 12 11 35 35 H 1.09001 * 109.47640 * 60.33008 * 18 9 7 36 36 H 1.09002 * 109.47225 * 300.30530 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0018 11 6 1.4797 -4.9871 0.0099 12 6 0.5868 -5.0667 -1.2260 13 6 -0.1813 -6.4013 -1.2296 14 6 -0.2186 -6.8123 -2.7232 15 6 1.1760 -6.3727 -3.2347 16 6 1.4481 -5.0443 -2.4978 17 6 -0.4000 -3.9019 -1.2439 18 6 0.3706 -2.5794 -1.2482 19 1 -0.4849 0.8401 -0.0004 20 1 0.6248 -2.5566 0.8908 21 1 2.8753 -3.6006 0.8894 22 1 2.8690 -3.6079 -0.8907 23 1 2.1876 -5.8159 0.0007 24 1 0.8638 -5.0453 0.9074 25 1 0.3501 -7.1492 -0.6411 26 1 -1.1922 -6.2609 -0.8470 27 1 -1.0093 -6.2789 -3.2508 28 1 -0.3460 -7.8899 -2.8270 29 1 1.1541 -6.2135 -4.3128 30 1 1.9311 -7.1146 -2.9749 31 1 1.1623 -4.2020 -3.1279 32 1 2.5031 -4.9718 -2.2335 33 1 -1.0196 -3.9643 -2.1384 34 1 -1.0343 -3.9494 -0.3587 35 1 0.9971 -2.5271 -2.1386 36 1 -0.3341 -1.7477 -1.2500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = -43.667505 kcal Electronic energy + Delta-G solvation = -14494.316620 eV Core-core repulsion = 12362.273430 eV Total energy + Delta-G solvation = -2132.043190 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.37586 -35.18909 -32.32405 -29.77620 -29.29720 -28.29234 -25.19153 -22.69191 -21.61036 -20.52028 -19.40589 -17.23979 -16.22966 -15.23081 -14.98156 -14.45612 -13.56354 -13.13901 -12.78444 -12.54859 -12.34945 -12.03130 -11.55241 -11.13271 -10.90552 -10.78112 -10.70096 -10.67652 -10.47738 -10.14253 -10.07353 -10.01152 -9.81410 -9.57809 -9.12151 -8.71459 -8.51010 -8.19386 -5.90174 -3.96239 3.35503 3.40025 3.42779 4.49469 4.95310 5.03554 5.11690 5.38829 5.66662 5.74704 5.80916 5.87564 5.94911 6.00480 6.13973 6.17490 6.28574 6.34893 6.41655 6.49499 6.57062 6.62573 6.65751 6.72250 6.86666 6.96326 7.00102 7.12858 7.28802 7.41668 7.66305 7.84155 8.13851 8.27210 8.57330 9.08193 9.67800 11.14979 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.057663 B = 0.008348 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.464298 B = 3353.393144 C = 3411.142645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.055 4.055 13 C -0.117 4.117 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.109 4.109 19 H 0.259 0.741 20 H 0.022 0.978 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -10.765 -3.995 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.055 4.055 13 C -0.155 4.155 14 C -0.161 4.161 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.140 4.140 18 C -0.147 4.147 19 H 0.069 0.931 20 H 0.040 0.960 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.122 -10.628 -3.989 11.353 hybrid contribution 0.464 0.962 0.005 1.068 sum 0.342 -9.666 -3.984 10.461 Atomic orbital electron populations 1.69877 1.05806 1.26230 1.51112 1.24961 0.94817 0.98871 0.95362 0.86740 0.79662 0.83541 0.78515 1.20407 1.21377 1.20399 1.21240 0.92797 0.90966 1.50028 0.93007 1.18613 0.92614 0.91329 0.94243 1.21675 0.98633 0.94618 0.99782 1.21595 0.97648 0.98002 0.96793 1.20912 0.95321 0.94323 0.94936 1.22483 1.00037 0.97150 0.95822 1.22472 0.97387 0.99587 0.96609 1.22390 0.96774 0.97854 0.99230 1.22275 0.99938 0.96645 0.96224 1.21651 0.96851 0.95946 0.99597 1.21635 0.99430 0.94972 0.98673 0.93143 0.96021 0.93938 0.93323 0.93860 0.92968 0.92261 0.92090 0.91841 0.92542 0.92484 0.92371 0.91462 0.91836 0.94123 0.93250 0.94735 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.31 55.43 0.63 -25.19 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.33 8.56 -34.44 -0.29 -14.62 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.27 2.09 -91.76 -0.19 1.08 16 10 C -0.11 -2.33 4.92 -26.69 -0.13 -2.46 16 11 C -0.10 -1.86 4.42 -26.86 -0.12 -1.98 16 12 C -0.05 -0.94 0.62 -154.01 -0.10 -1.03 16 13 C -0.12 -1.70 5.89 -25.19 -0.15 -1.85 16 14 C -0.12 -1.59 6.91 -24.69 -0.17 -1.77 16 15 C -0.12 -1.67 6.84 -25.02 -0.17 -1.84 16 16 C -0.11 -1.84 5.06 -25.71 -0.13 -1.97 16 17 C -0.10 -2.03 4.41 -26.86 -0.12 -2.14 16 18 C -0.11 -2.59 4.76 -26.70 -0.13 -2.72 16 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 20 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.05 1.03 6.62 -51.93 -0.34 0.68 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 26 H 0.06 0.87 7.82 -51.93 -0.41 0.47 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.17 6.48 -51.93 -0.34 0.83 16 32 H 0.06 1.05 6.47 -51.93 -0.34 0.72 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.82 6.63 -51.93 -0.34 0.47 16 36 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 LS Contribution 267.33 15.07 4.03 4.03 Total: -1.00 -27.98 267.33 -8.41 -36.39 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.26 Total: -2.12 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -1.79 Total: -29.71 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.63 Total: -25.19 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.98 -8.41 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.273 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds