Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48500 * 109.46721 * 239.99342 * 3 2 1 5 5 H 1.48492 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46769 * 119.99385 * 3 2 1 7 7 C 1.37871 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00245 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.45787 * 180.02562 * 9 7 2 11 11 C 1.53066 * 109.43328 * 179.67885 * 10 9 7 12 12 C 1.52681 * 109.48160 * 59.43236 * 11 10 9 13 13 C 1.53981 * 109.80327 * 179.66765 * 12 11 10 14 14 C 1.54954 * 104.13229 * 217.33346 * 13 12 11 15 15 C 1.54910 * 102.78795 * 37.69912 * 14 13 12 16 16 C 1.53615 * 109.96776 * 62.32774 * 12 11 10 17 17 C 1.52676 * 110.34353 * 300.84046 * 12 11 10 18 18 C 1.53002 * 109.46166 * 59.92666 * 9 7 2 19 19 H 0.96999 * 119.99525 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.44765 * 299.95637 * 9 7 2 21 21 H 1.08998 * 109.48000 * 59.68654 * 10 9 7 22 22 H 1.09002 * 109.47524 * 299.66309 * 10 9 7 23 23 H 1.09004 * 109.46686 * 179.43622 * 11 10 9 24 24 H 1.09003 * 109.47008 * 299.42753 * 11 10 9 25 25 H 1.08999 * 110.50263 * 335.99570 * 13 12 11 26 26 H 1.08999 * 110.49503 * 98.67069 * 13 12 11 27 27 H 1.08999 * 110.74844 * 279.37279 * 14 13 12 28 28 H 1.09006 * 110.90420 * 156.09712 * 14 13 12 29 29 H 1.08997 * 110.48872 * 203.52501 * 15 14 13 30 30 H 1.09003 * 110.59820 * 80.93845 * 15 14 13 31 31 H 1.09005 * 110.05122 * 238.30019 * 16 12 11 32 32 H 1.08994 * 110.05818 * 359.73634 * 16 12 11 33 33 H 1.08998 * 109.47172 * 179.16493 * 17 12 11 34 34 H 1.09004 * 109.46986 * 299.15704 * 17 12 11 35 35 H 1.09001 * 109.47640 * 60.33008 * 18 9 7 36 36 H 1.09002 * 109.47225 * 300.30530 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2456 -3.6619 0.0018 11 6 1.4797 -4.9871 0.0099 12 6 0.5868 -5.0667 -1.2260 13 6 -0.1813 -6.4013 -1.2296 14 6 -0.2186 -6.8123 -2.7232 15 6 1.1760 -6.3727 -3.2347 16 6 1.4481 -5.0443 -2.4978 17 6 -0.4000 -3.9019 -1.2439 18 6 0.3706 -2.5794 -1.2482 19 1 -0.4849 0.8401 -0.0004 20 1 0.6248 -2.5566 0.8908 21 1 2.8753 -3.6006 0.8894 22 1 2.8690 -3.6079 -0.8907 23 1 2.1876 -5.8159 0.0007 24 1 0.8638 -5.0453 0.9074 25 1 0.3501 -7.1492 -0.6411 26 1 -1.1922 -6.2609 -0.8470 27 1 -1.0093 -6.2789 -3.2508 28 1 -0.3460 -7.8899 -2.8270 29 1 1.1541 -6.2135 -4.3128 30 1 1.9311 -7.1146 -2.9749 31 1 1.1623 -4.2020 -3.1279 32 1 2.5031 -4.9718 -2.2335 33 1 -1.0196 -3.9643 -2.1384 34 1 -1.0343 -3.9494 -0.3587 35 1 0.9971 -2.5271 -2.1386 36 1 -0.3341 -1.7477 -1.2500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = -57.258535 kcal Electronic energy + Delta-G solvation = -14494.905971 eV Core-core repulsion = 12362.273430 eV Total energy + Delta-G solvation = -2132.632542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81238 -36.82733 -34.25527 -31.45829 -30.95233 -29.51821 -27.03877 -24.29651 -23.30556 -21.87894 -20.90152 -18.76349 -18.37789 -16.68812 -16.42543 -16.17967 -15.08868 -14.83006 -14.20914 -14.02009 -13.97440 -13.73291 -13.25778 -12.87996 -12.75145 -12.49923 -12.21172 -11.94677 -11.85135 -11.73479 -11.59620 -11.43377 -11.30549 -11.27133 -10.89618 -10.55940 -10.39001 -10.26423 -8.06007 -6.20738 1.39551 1.40960 1.48619 2.43263 3.19133 3.74994 3.85145 3.89178 4.33219 4.41521 4.50027 4.58552 4.68408 4.75790 4.83752 4.88241 4.91876 4.93636 5.02710 5.08550 5.16261 5.20909 5.22487 5.31032 5.32294 5.46443 5.50445 5.57041 5.60075 5.66677 5.73064 5.81699 6.08399 6.25909 6.44435 6.92760 7.46991 8.97158 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.057663 B = 0.008348 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.464298 B = 3353.393144 C = 3411.142645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.047 3.953 10 C -0.103 4.103 11 C -0.098 4.098 12 C -0.055 4.055 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.095 4.095 18 C -0.100 4.100 19 H 0.259 0.741 20 H -0.014 1.014 21 H 0.038 0.962 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.028 0.972 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -12.403 -4.726 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.140 4.140 11 C -0.135 4.135 12 C -0.055 4.055 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.133 4.133 18 C -0.138 4.138 19 H 0.068 0.932 20 H 0.004 0.996 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.494 -12.276 -4.720 13.161 hybrid contribution 0.271 1.516 0.258 1.562 sum 0.765 -10.759 -4.462 11.673 Atomic orbital electron populations 1.70031 1.07144 1.26966 1.51529 1.25751 0.95680 1.02324 0.94978 0.85726 0.78494 0.79336 0.78794 1.19683 1.20867 1.19716 1.21650 0.92944 0.92646 1.50314 0.93323 1.18593 0.93074 0.92240 0.93228 1.21549 0.97886 0.95006 0.99597 1.21563 0.97973 0.96781 0.97208 1.20905 0.94905 0.94738 0.94983 1.22443 0.99679 0.95493 0.97480 1.22473 0.96944 1.01148 0.95046 1.22367 0.97483 0.96207 0.99521 1.22249 0.99310 0.97985 0.95775 1.21542 0.97103 0.95008 0.99609 1.21414 0.98599 0.96149 0.97631 0.93179 0.99590 0.94331 0.93229 0.91020 0.93420 0.90691 0.92104 0.92131 0.90014 0.91406 0.90821 0.93345 0.92305 0.92948 0.94324 0.95311 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 11.31 21.45 0.24 -54.51 16 2 C 0.01 0.63 5.30 84.65 0.45 1.07 16 3 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.87 8.56 25.60 0.22 -30.65 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.45 2.09 -11.54 -0.02 2.43 16 10 C -0.10 -4.39 4.92 30.62 0.15 -4.24 16 11 C -0.10 -3.40 4.42 30.51 0.13 -3.26 16 12 C -0.06 -1.80 0.62 -51.86 -0.03 -1.84 16 13 C -0.11 -2.93 5.89 31.59 0.19 -2.74 16 14 C -0.12 -2.62 6.91 31.92 0.22 -2.40 16 15 C -0.12 -2.75 6.84 31.70 0.22 -2.53 16 16 C -0.12 -3.55 5.06 31.26 0.16 -3.39 16 17 C -0.10 -3.75 4.41 30.51 0.13 -3.62 16 18 C -0.10 -4.90 4.76 30.62 0.15 -4.76 16 19 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 20 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 2.08 6.62 -2.39 -0.02 2.07 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.73 7.84 -2.39 -0.02 1.71 16 26 H 0.06 1.58 7.82 -2.39 -0.02 1.56 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.65 6.48 -2.38 -0.02 1.63 16 32 H 0.06 1.84 6.47 -2.39 -0.02 1.82 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.03 1.40 6.63 -2.39 -0.02 1.38 16 36 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 Total: -1.00 -61.21 267.33 5.25 -55.96 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.02 Total: 7.57 kcal Atomic # 6 Polarization: -57.88 SS G_CDS: 1.96 Total: -55.92 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.24 Total: -54.51 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.21 5.25 -55.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.298 kcal (2) G-P(sol) polarization free energy of solvation -61.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds