Wall clock time and date at job start Mon Mar 30 2020 02:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31042 * 1 3 3 Si 1.86803 * 119.99467 * 2 1 4 4 H 1.48502 * 109.46810 * 239.99839 * 3 2 1 5 5 H 1.48497 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46999 * 120.00165 * 3 2 1 7 7 C 1.39907 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.39762 * 120.00173 * 0.02562 * 7 2 1 10 10 S 1.75202 * 124.96442 * 359.95642 * 9 7 2 11 11 C 1.69996 * 92.24104 * 180.02562 * 10 9 7 12 12 C 1.38414 * 111.60227 * 0.02562 * 11 10 9 13 13 C 1.39855 * 113.77572 * 0.02562 * 12 11 10 14 14 N 1.39739 * 110.94644 * 179.97438 * 13 12 11 15 15 C 1.46670 * 109.14917 * 359.97438 * 14 13 12 16 16 C 1.47972 * 137.58412 * 179.97438 * 12 11 10 17 17 O 1.21363 * 127.24629 * 359.97438 * 16 12 11 18 18 H 0.96998 * 120.00269 * 359.97438 * 1 2 3 19 19 H 1.08009 * 124.20165 * 179.97438 * 11 10 9 20 20 H 1.00901 * 110.99967 * 122.65435 * 14 13 12 21 21 H 1.09001 * 110.18955 * 119.06927 * 15 14 13 22 22 H 1.08997 * 110.19470 * 240.93298 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.0980 1.6965 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0980 1.6965 1.2125 7 6 2.0100 -1.2116 -0.0005 8 1 3.0900 -1.2115 -0.0001 9 6 1.3113 -2.4220 -0.0016 10 16 -0.4341 -2.5738 -0.0013 11 6 -0.3532 -4.2718 -0.0024 12 6 0.9565 -4.7196 -0.0024 13 6 1.9040 -3.6909 -0.0009 14 7 3.2024 -4.2077 -0.0004 15 6 3.1370 -5.6729 -0.0010 16 6 1.6673 -6.0174 -0.0026 17 8 1.1729 -7.1257 -0.0024 18 1 -0.4850 0.8400 0.0004 19 1 -1.2166 -4.9208 -0.0021 20 1 3.7268 -3.8686 -0.7929 21 1 3.6173 -6.0706 -0.8950 22 1 3.6163 -6.0713 0.8933 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260393126.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:03 Heat of formation + Delta-G solvation = -32.634162 kcal Electronic energy + Delta-G solvation = -11168.448964 eV Core-core repulsion = 9006.711892 eV Total energy + Delta-G solvation = -2161.737072 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.03211 -38.40504 -36.05926 -34.14599 -31.14051 -28.21838 -26.10861 -24.97528 -21.13799 -19.67428 -19.32724 -17.83242 -17.02003 -16.72310 -16.19540 -15.47269 -15.07046 -14.55537 -14.15796 -13.90996 -13.60296 -13.38296 -12.83056 -12.69317 -12.29488 -11.95085 -11.45698 -11.30281 -10.81065 -10.17928 -9.35898 -8.82572 -8.47826 -6.27176 0.04492 0.98685 1.44088 1.55114 1.58075 1.64404 1.88225 2.20970 2.27207 3.02834 3.26737 3.56257 4.05250 4.33341 4.61974 4.73288 5.05078 5.25293 5.37229 5.60382 5.98028 6.15202 6.47704 6.57425 6.62295 6.75973 8.08162 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.052095 B = 0.011011 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.353850 B = 2542.386951 C = 3062.498219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.012 3.988 3 Si 1.010 2.990 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.101 0.899 9 C -0.033 4.033 10 S 0.284 5.716 11 C -0.406 4.406 12 C -0.225 4.225 13 C -0.124 4.124 14 N -0.589 5.589 15 C 0.024 3.976 16 C 0.396 3.604 17 O -0.502 6.502 18 H 0.311 0.689 19 H 0.127 0.873 20 H 0.343 0.657 21 H 0.124 0.876 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 2.839 -1.316 5.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.205 4.205 3 Si 0.829 3.171 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.428 4.428 8 H 0.119 0.881 9 C -0.155 4.155 10 S 0.550 5.450 11 C -0.545 4.545 12 C -0.241 4.241 13 C -0.224 4.224 14 N -0.217 5.217 15 C -0.105 4.105 16 C 0.277 3.723 17 O -0.383 6.383 18 H 0.124 0.876 19 H 0.145 0.855 20 H 0.165 0.835 21 H 0.142 0.858 22 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.673 3.424 -0.639 4.390 hybrid contribution 0.803 -0.921 -0.736 1.427 sum 3.476 2.503 -1.375 4.499 Atomic orbital electron populations 1.68708 1.08779 1.32473 1.34315 1.27081 0.95864 1.05503 0.92018 0.84754 0.78294 0.73791 0.80225 1.18041 1.18816 1.18446 1.19330 0.96056 0.88993 1.38405 0.88088 1.21758 0.96732 0.94416 1.02634 1.83104 1.02110 0.91161 1.68640 1.25616 0.98140 1.06012 1.24720 1.20982 0.94354 0.96717 1.12095 1.18706 0.89049 0.91507 1.23141 1.57861 1.12488 1.04892 1.46480 1.22745 0.93036 0.88710 1.05991 1.23401 0.93715 0.86493 0.68741 1.90425 1.77879 1.27892 1.42091 0.87608 0.85476 0.83542 0.85801 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.33 10.60 21.84 0.23 -36.10 14 2 C 0.01 0.52 5.50 85.21 0.47 0.98 14 3 Si 1.01 32.83 29.56 68.60 2.03 34.85 14 4 H -0.26 -8.08 7.11 99.48 0.71 -7.38 14 5 H -0.26 -8.07 7.11 99.48 0.71 -7.37 14 6 H -0.26 -8.39 7.11 99.48 0.71 -7.69 14 7 C -0.39 -18.66 9.27 23.04 0.21 -18.44 14 8 H 0.10 4.58 7.85 -2.91 -0.02 4.56 14 9 C -0.03 -1.67 6.20 23.08 0.14 -1.53 14 10 S 0.28 13.74 19.87 -56.49 -1.12 12.62 14 11 C -0.41 -20.41 11.03 67.86 0.75 -19.66 14 12 C -0.22 -11.27 6.56 -20.26 -0.13 -11.41 14 13 C -0.12 -6.03 7.21 38.71 0.28 -5.75 14 14 N -0.59 -23.50 7.10 -340.51 -2.42 -25.92 14 15 C 0.02 0.84 7.67 85.68 0.66 1.50 14 16 C 0.40 17.72 7.98 28.35 0.23 17.95 14 17 O -0.50 -24.15 18.03 -3.29 -0.06 -24.21 14 18 H 0.31 12.32 8.30 -92.71 -0.77 11.55 14 19 H 0.13 6.12 8.06 -2.91 -0.02 6.09 14 20 H 0.34 12.06 8.84 -89.69 -0.79 11.27 14 21 H 0.12 3.32 8.14 -2.39 -0.02 3.30 14 22 H 0.13 3.90 8.14 -2.39 -0.02 3.88 14 Total: -1.00 -58.63 217.22 1.74 -56.90 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.47 Total: 18.21 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 2.60 Total: -36.36 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -2.19 Total: -62.02 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.21 kcal Atomic # 14 Polarization: 32.83 SS G_CDS: 2.03 Total: 34.85 kcal Atomic # 16 Polarization: 13.74 SS G_CDS: -1.12 Total: 12.62 kcal Total: -58.63 1.74 -56.90 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393126.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.262 kcal (2) G-P(sol) polarization free energy of solvation -58.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds