Wall clock time and date at job start Mon Mar 30 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00371 * 2 1 4 4 H 1.48504 * 109.46639 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47405 * 119.99908 * 3 2 1 6 6 H 1.48497 * 109.47178 * 240.00346 * 3 2 1 7 7 C 1.37886 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99627 * 18.23471 * 7 2 1 9 9 C 1.50693 * 120.00333 * 198.23055 * 7 2 1 10 10 H 1.08998 * 109.54717 * 305.85101 * 9 7 2 11 11 C 1.53125 * 109.54947 * 185.66687 * 9 7 2 12 12 C 1.53060 * 109.73335 * 169.63547 * 11 9 7 13 13 C 1.52067 * 108.64642 * 51.62455 * 12 11 9 14 14 C 1.38462 * 124.72022 * 162.22188 * 13 12 11 15 15 N 1.29900 * 117.53142 * 180.02562 * 14 13 12 16 16 S 1.69674 * 107.12994 * 359.97438 * 15 14 13 17 17 C 1.35829 * 121.98360 * 342.23769 * 13 12 11 18 18 C 1.50363 * 125.89003 * 359.90645 * 17 13 12 19 19 H 0.96997 * 119.99862 * 174.66901 * 1 2 3 20 20 H 1.09004 * 109.42301 * 289.71798 * 11 9 7 21 21 H 1.08998 * 109.42144 * 49.55148 * 11 9 7 22 22 H 1.09005 * 109.59998 * 171.36596 * 12 11 9 23 23 H 1.08993 * 109.60640 * 291.86876 * 12 11 9 24 24 H 1.08004 * 121.23592 * 0.02562 * 14 13 12 25 25 H 1.08994 * 109.67957 * 224.61986 * 18 17 13 26 26 H 1.08994 * 109.68201 * 104.06599 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 1.5052 -2.1060 -0.2917 9 6 3.4548 -1.2268 0.4088 10 1 4.0182 -0.5107 -0.1894 11 6 4.0176 -2.6336 0.1883 12 6 5.5392 -2.6132 0.3528 13 6 5.8760 -1.9485 1.6783 14 6 7.0938 -2.0574 2.3282 15 7 7.2301 -1.4297 3.4573 16 16 5.7633 -0.6353 3.7677 17 6 4.9793 -1.1750 2.3437 18 6 3.5778 -0.8661 1.8952 19 1 -0.4850 -0.8364 -0.0780 20 1 3.5831 -3.3165 0.9185 21 1 3.7660 -2.9712 -0.8171 22 1 5.9213 -3.6341 0.3480 23 1 5.9878 -2.0482 -0.4643 24 1 7.9005 -2.6425 1.9119 25 1 3.3738 0.1956 2.0335 26 1 2.8683 -1.4554 2.4759 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395857.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:48 Heat of formation + Delta-G solvation = -1.086785 kcal Electronic energy + Delta-G solvation = -11627.586135 eV Core-core repulsion = 9603.050155 eV Total energy + Delta-G solvation = -2024.535981 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.55026 -37.46047 -34.60095 -31.84227 -31.37964 -26.93358 -24.88223 -23.78581 -21.71265 -19.74437 -19.13831 -18.74293 -16.43503 -15.87256 -15.66303 -15.23579 -14.75778 -14.30262 -14.06689 -13.90108 -13.74981 -12.91960 -12.49475 -12.36888 -12.13405 -11.85662 -11.46335 -11.41812 -11.29735 -10.82685 -10.38298 -10.14129 -9.45958 -8.72984 -6.35846 -0.20138 0.56612 0.96867 1.43783 1.51166 1.55371 1.70355 2.46928 3.06393 3.75080 3.87655 4.13058 4.20708 4.42808 4.53020 4.70531 4.76132 4.90376 4.94593 5.07031 5.20478 5.36816 5.47651 5.64370 5.71819 6.04742 6.09547 6.60170 7.41473 8.64983 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.041928 B = 0.011491 C = 0.010031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.654765 B = 2436.006910 C = 2790.542229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.018 4.018 3 Si 1.077 2.923 4 H -0.290 1.290 5 H -0.247 1.247 6 H -0.262 1.262 7 C -0.599 4.599 8 H 0.022 0.978 9 C 0.024 3.976 10 H 0.029 0.971 11 C -0.101 4.101 12 C -0.039 4.039 13 C -0.178 4.178 14 C 0.109 3.891 15 N -0.488 5.488 16 S 0.221 5.779 17 C -0.173 4.173 18 C -0.052 4.052 19 H 0.253 0.747 20 H 0.042 0.958 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.219 0.781 25 H 0.071 0.929 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.944 -2.749 3.070 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.216 4.216 3 Si 0.899 3.101 4 H -0.216 1.216 5 H -0.172 1.172 6 H -0.187 1.187 7 C -0.637 4.637 8 H 0.040 0.960 9 C 0.004 3.996 10 H 0.047 0.953 11 C -0.138 4.138 12 C -0.079 4.079 13 C -0.194 4.194 14 C -0.090 4.090 15 N -0.306 5.306 16 S 0.376 5.624 17 C -0.303 4.303 18 C -0.091 4.091 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.078 0.922 22 H 0.121 0.879 23 H 0.107 0.893 24 H 0.235 0.765 25 H 0.089 0.911 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.335 -0.172 5.137 15.229 hybrid contribution -1.051 -2.651 -1.690 3.315 sum 13.284 -2.824 3.448 14.011 Atomic orbital electron populations 1.70981 1.08324 1.30151 1.48045 1.27107 0.96042 1.06102 0.92397 0.83641 0.74965 0.72090 0.79361 1.21644 1.17179 1.18716 1.22220 0.97471 0.94706 1.49330 0.95973 1.19029 0.94597 0.95311 0.90687 0.95267 1.21429 0.94796 0.96856 1.00749 1.20501 0.95333 1.00881 0.91154 1.21073 0.93064 1.03471 1.01816 1.23158 0.98106 0.97228 0.90477 1.76800 1.16265 1.17489 1.20087 1.83722 1.04762 1.51097 1.22837 1.25767 1.02328 1.01743 1.00430 1.20679 0.87733 1.01276 0.99446 0.93760 0.93869 0.92180 0.87889 0.89326 0.76466 0.91106 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.70 21.45 0.29 -57.59 15 2 C -0.02 -1.01 5.34 84.66 0.45 -0.56 15 3 Si 1.08 48.77 26.55 68.60 1.82 50.59 15 4 H -0.29 -13.38 7.11 99.48 0.71 -12.68 15 5 H -0.25 -10.00 5.44 99.48 0.54 -9.46 15 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 7 C -0.60 -32.76 8.77 25.60 0.22 -32.54 15 8 H 0.02 1.33 7.99 -2.91 -0.02 1.30 15 9 C 0.02 1.07 1.69 -11.35 -0.02 1.05 15 10 H 0.03 1.28 6.75 -2.39 -0.02 1.26 15 11 C -0.10 -3.66 5.10 30.66 0.16 -3.51 15 12 C -0.04 -1.05 6.20 30.31 0.19 -0.87 15 13 C -0.18 -5.30 5.81 -19.93 -0.12 -5.42 15 14 C 0.11 2.79 11.14 85.03 0.95 3.74 15 15 N -0.49 -14.61 12.09 -62.48 -0.76 -15.37 15 16 S 0.22 6.99 23.71 -56.49 -1.34 5.66 15 17 C -0.17 -6.07 6.29 25.02 0.16 -5.91 15 18 C -0.05 -2.14 5.22 29.89 0.16 -1.98 15 19 H 0.25 15.81 8.73 -92.71 -0.81 15.00 15 20 H 0.04 1.62 8.10 -2.38 -0.02 1.61 15 21 H 0.06 2.19 8.10 -2.39 -0.02 2.17 15 22 H 0.10 2.10 8.14 -2.38 -0.02 2.08 15 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.22 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.07 3.00 5.00 -2.39 -0.01 2.99 15 26 H 0.07 2.91 8.11 -2.39 -0.02 2.89 15 Total: -1.00 -63.24 228.38 3.14 -60.10 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 0.97 Total: 2.61 kcal Atomic # 6 Polarization: -48.14 SS G_CDS: 2.15 Total: -46.00 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -0.46 Total: -72.96 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.82 Total: 50.59 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.34 Total: 5.66 kcal Total: -63.24 3.14 -60.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395857.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.009 kcal (2) G-P(sol) polarization free energy of solvation -63.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds