Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29971 * 125.80124 * 2 1 4 4 O 1.41209 * 109.09728 * 179.97438 * 3 2 1 5 5 C 1.36675 * 108.10341 * 0.02562 * 4 3 2 6 6 C 1.37991 * 139.67000 * 180.40973 * 5 4 3 7 7 C 1.37828 * 114.88924 * 180.02562 * 6 5 4 8 8 C 1.39687 * 125.05264 * 179.78364 * 7 6 5 9 9 H 1.07997 * 120.00642 * 10.06552 * 8 7 6 10 10 C 1.40273 * 119.99645 * 190.06659 * 8 7 6 11 11 N 1.30718 * 119.99875 * 174.93182 * 10 8 7 12 12 Si 1.86797 * 119.99888 * 354.92931 * 10 8 7 13 13 H 1.48499 * 109.47130 * 180.02562 * 12 10 8 14 14 H 1.48495 * 109.47287 * 300.00242 * 12 10 8 15 15 H 1.48499 * 109.47027 * 60.00223 * 12 10 8 16 16 S 1.75605 * 109.88691 * 359.52543 * 7 6 5 17 17 C 1.38681 * 106.62344 * 359.97438 * 5 4 3 18 18 H 1.09002 * 109.47404 * 270.02705 * 1 2 3 19 19 H 1.08999 * 109.47097 * 30.02582 * 1 2 3 20 20 H 1.08998 * 109.47073 * 150.02873 * 1 2 3 21 21 H 1.07996 * 122.55221 * 359.87105 * 6 5 4 22 22 H 0.97007 * 119.99604 * 359.40729 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2673 1.0541 0.0000 4 8 3.6198 0.6483 0.0006 5 6 3.6531 -0.7181 0.0004 6 6 4.5716 -1.7479 0.0071 7 6 4.0247 -3.0130 0.0019 8 6 4.7559 -4.2032 0.0026 9 1 5.8224 -4.1817 0.1709 10 6 4.1048 -5.4264 -0.2153 11 7 4.8006 -6.5287 -0.3133 12 14 2.2437 -5.4801 -0.3652 13 1 1.8054 -6.8809 -0.5905 14 1 1.6312 -4.9656 0.8859 15 1 1.8147 -4.6366 -1.5096 16 16 2.2719 -2.9060 0.0017 17 6 2.3344 -1.1472 0.0003 18 1 -0.3634 0.0005 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 5.6377 -1.5757 0.0132 22 1 5.7677 -6.4996 -0.2440 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260567981.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = 19.449498 kcal Electronic energy + Delta-G solvation = -11182.677920 eV Core-core repulsion = 9023.199365 eV Total energy + Delta-G solvation = -2159.478555 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 209.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.06549 -37.35187 -35.42393 -35.03860 -31.11520 -29.38459 -27.03505 -23.74565 -21.78321 -20.76168 -20.44558 -18.38375 -17.02548 -16.72780 -16.11501 -15.44494 -14.88905 -14.66530 -14.18876 -13.99507 -13.83077 -13.75702 -12.82044 -12.40811 -12.31961 -12.17855 -11.93146 -11.69667 -11.34511 -10.66986 -9.85565 -9.69161 -8.78674 -6.92339 -0.04492 0.63109 1.08168 1.17690 1.40045 1.48720 1.78634 1.91282 2.08673 2.14650 2.73902 3.54602 3.92791 4.40675 4.66254 4.67785 4.77560 4.97318 5.04034 5.10360 5.31002 5.49503 5.68218 5.76428 6.15807 6.55554 7.54096 Molecular weight = 209.03amu Principal moments of inertia in cm(-1) A = 0.051912 B = 0.012714 C = 0.010289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.248323 B = 2201.808983 C = 2720.730161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.172 3.828 3 N -0.393 5.393 4 O -0.140 6.140 5 C 0.124 3.876 6 C -0.368 4.368 7 C 0.056 3.944 8 C -0.412 4.412 9 H 0.090 0.910 10 C 0.026 3.974 11 N -0.770 5.770 12 Si 0.924 3.076 13 H -0.193 1.193 14 H -0.180 1.180 15 H -0.184 1.184 16 S 0.076 5.924 17 C -0.460 4.460 18 H 0.105 0.895 19 H 0.095 0.905 20 H 0.096 0.904 21 H 0.116 0.884 22 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -1.168 -0.027 8.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.152 5.152 4 O -0.146 6.146 5 C 0.062 3.938 6 C -0.393 4.393 7 C -0.064 4.064 8 C -0.447 4.447 9 H 0.108 0.892 10 C -0.199 4.199 11 N -0.390 5.390 12 Si 0.740 3.260 13 H -0.115 1.115 14 H -0.106 1.106 15 H -0.108 1.108 16 S 0.326 5.674 17 C -0.576 4.576 18 H 0.123 0.877 19 H 0.113 0.887 20 H 0.115 0.885 21 H 0.134 0.866 22 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.635 -1.811 -0.264 10.791 hybrid contribution 3.524 1.415 0.294 3.809 sum -7.111 -0.396 0.030 7.122 Atomic orbital electron populations 1.20546 0.82517 1.05215 1.05262 1.23078 0.99098 0.88111 0.89566 1.79680 0.83721 1.18720 1.33037 1.89219 1.24987 1.17282 1.83115 1.20401 0.95448 0.84189 0.93808 1.18507 0.97578 0.88266 1.34955 1.21517 0.94815 0.95423 0.94632 1.20684 0.97759 0.91366 1.34935 0.89165 1.28541 1.11839 0.89858 0.89680 1.70562 1.11846 1.29768 1.26801 0.84590 0.68942 0.86040 0.86450 1.11475 1.10562 1.10845 1.83701 1.03464 0.97723 1.82533 1.24379 0.94586 1.00785 1.37895 0.87661 0.88667 0.88546 0.86562 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.14 10.45 71.23 0.74 -1.40 14 2 C 0.17 7.21 7.24 43.62 0.32 7.53 14 3 N -0.39 -18.52 12.86 -46.80 -0.60 -19.13 14 4 O -0.14 -7.36 12.22 9.67 0.12 -7.24 14 5 C 0.12 6.45 7.84 22.32 0.17 6.62 14 6 C -0.37 -18.85 10.17 22.11 0.22 -18.63 14 7 C 0.06 2.74 5.98 22.52 0.13 2.87 14 8 C -0.41 -19.56 9.71 23.11 0.22 -19.34 14 9 H 0.09 4.40 8.06 -2.91 -0.02 4.37 14 10 C 0.03 1.13 5.52 85.35 0.47 1.60 14 11 N -0.77 -34.14 13.65 21.89 0.30 -33.84 14 12 Si 0.92 32.06 24.50 68.60 1.68 33.74 14 13 H -0.19 -5.99 7.11 99.48 0.71 -5.28 14 14 H -0.18 -5.82 6.31 97.30 0.61 -5.20 14 15 H -0.18 -6.14 6.35 97.90 0.62 -5.52 14 16 S 0.08 3.23 15.36 -56.49 -0.87 2.36 14 17 C -0.46 -21.57 7.23 23.17 0.17 -21.40 14 18 H 0.11 2.44 8.14 -2.39 -0.02 2.42 14 19 H 0.09 2.24 8.14 -2.39 -0.02 2.22 14 20 H 0.10 2.33 8.14 -2.39 -0.02 2.31 14 21 H 0.12 5.81 8.06 -2.91 -0.02 5.78 14 22 H 0.30 12.80 8.72 -92.70 -0.81 11.99 14 Total: -1.00 -57.28 211.74 4.11 -53.17 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.03 Total: 13.08 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 2.46 Total: -42.15 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.30 Total: -52.97 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.12 Total: -7.24 kcal Atomic # 14 Polarization: 32.06 SS G_CDS: 1.68 Total: 33.74 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -0.87 Total: 2.36 kcal Total: -57.28 4.11 -53.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567981.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.618 kcal (2) G-P(sol) polarization free energy of solvation -57.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds