Wall clock time and date at job start Mon Mar 30 2020 02:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86801 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47397 * 270.00279 * 3 2 1 5 5 H 1.48499 * 109.47059 * 30.00235 * 3 2 1 6 6 H 1.48494 * 109.46989 * 150.00086 * 3 2 1 7 7 C 1.40077 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.39907 * 119.99737 * 359.97438 * 7 2 1 10 10 C 1.37890 * 125.39513 * 180.02562 * 9 7 2 11 11 C 1.37438 * 114.97263 * 179.70004 * 10 9 7 12 12 C 1.36059 * 114.04754 * 0.29634 * 11 10 9 13 13 S 1.75558 * 110.53811 * 359.93416 * 12 11 10 14 14 C 1.51552 * 123.71105 * 179.89889 * 12 11 10 15 15 C 1.53326 * 108.04612 * 344.41438 * 14 12 11 16 16 N 1.46963 * 109.14140 * 49.10393 * 15 14 12 17 17 C 1.46889 * 111.33624 * 287.67050 * 16 15 14 18 18 H 0.96995 * 120.00726 * 359.97438 * 1 2 3 19 19 H 1.08002 * 122.51729 * 359.97438 * 10 9 7 20 20 H 1.08998 * 109.74088 * 104.04972 * 14 12 11 21 21 H 1.09000 * 109.74610 * 224.72283 * 14 12 11 22 22 H 1.09002 * 109.52472 * 169.00633 * 15 14 12 23 23 H 1.09003 * 109.52939 * 289.13443 * 15 14 12 24 24 H 1.00895 * 111.00673 * 163.46784 * 16 15 14 25 25 H 1.08992 * 109.59054 * 293.08794 * 17 16 15 26 26 H 1.09005 * 109.63538 * 172.55126 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5401 1.4402 0.7000 7 6 2.0091 -1.2131 -0.0005 8 1 3.0891 -1.2130 -0.0001 9 6 1.3095 -2.4247 -0.0005 10 6 1.8836 -3.6784 -0.0005 11 6 0.9925 -4.7247 0.0060 12 6 -0.3129 -4.3411 0.0049 13 16 -0.4404 -2.5902 -0.0028 14 6 -1.4753 -5.3135 0.0090 15 6 -0.9388 -6.6968 -0.3775 16 7 0.2480 -6.9978 0.4354 17 6 1.4020 -6.1920 0.0151 18 1 -0.4851 0.8399 0.0004 19 1 2.9534 -3.8271 -0.0009 20 1 -1.9172 -5.3549 1.0046 21 1 -2.2257 -4.9935 -0.7139 22 1 -1.7060 -7.4493 -0.1948 23 1 -0.6688 -6.7009 -1.4336 24 1 0.4653 -7.9827 0.4075 25 1 1.7119 -6.4918 -0.9859 26 1 2.2250 -6.3379 0.7149 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597109.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:37 Heat of formation + Delta-G solvation = -14.519623 kcal Electronic energy + Delta-G solvation = -11401.213492 eV Core-core repulsion = 9376.095019 eV Total energy + Delta-G solvation = -2025.118472 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.36764 -36.67879 -35.08428 -32.10407 -30.76278 -27.19854 -24.94875 -23.62399 -21.75665 -19.67542 -18.46641 -17.46130 -16.78573 -16.00465 -15.54781 -15.35734 -14.90672 -13.95548 -13.87760 -13.60677 -13.26041 -13.12026 -12.81929 -12.72948 -12.19809 -11.95141 -11.72869 -11.37059 -11.11133 -10.77012 -9.40423 -9.11583 -8.75828 -8.55553 -6.41080 0.81243 1.35875 1.49025 1.53009 1.70993 2.08631 2.21689 2.28368 3.10534 3.39099 4.16967 4.36094 4.44055 4.57583 4.65066 4.89459 4.90390 5.02433 5.02779 5.19748 5.38687 5.66667 5.87241 6.03997 6.19255 6.35486 6.64987 6.68834 6.73118 8.09891 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.072002 B = 0.009302 C = 0.008338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.786490 B = 3009.445089 C = 3357.175661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.013 3.987 3 Si 1.010 2.990 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.430 4.430 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.374 4.374 11 C -0.062 4.062 12 C -0.376 4.376 13 S 0.101 5.899 14 C -0.017 4.017 15 C 0.072 3.928 16 N -0.692 5.692 17 C 0.128 3.872 18 H 0.305 0.695 19 H 0.095 0.905 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.026 0.974 24 H 0.355 0.645 25 H 0.039 0.961 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 -4.489 -0.997 4.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.203 4.203 3 Si 0.829 3.171 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.465 4.465 8 H 0.111 0.889 9 C -0.116 4.116 10 C -0.400 4.400 11 C -0.073 4.073 12 C -0.492 4.492 13 S 0.362 5.638 14 C -0.057 4.057 15 C -0.059 4.059 16 N -0.325 5.325 17 C -0.003 4.003 18 H 0.118 0.882 19 H 0.113 0.887 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.120 0.880 23 H 0.044 0.956 24 H 0.175 0.825 25 H 0.056 0.944 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.428 -2.968 -0.499 3.866 hybrid contribution 1.882 -0.608 -0.788 2.129 sum -0.545 -3.576 -1.287 3.839 Atomic orbital electron populations 1.68921 1.08961 1.31908 1.34323 1.27166 0.95899 1.05617 0.91657 0.84744 0.78606 0.73939 0.79825 1.18239 1.18489 1.17970 1.19436 0.95587 0.89799 1.41671 0.88935 1.21993 0.95575 0.96615 0.97373 1.19679 0.97860 0.91461 1.30969 1.19225 0.92332 0.94892 1.00861 1.25227 0.97756 0.99651 1.26572 1.84163 1.05739 0.97268 1.76593 1.19974 0.93361 0.92292 1.00047 1.21895 0.93016 0.96744 0.94213 1.60079 1.04720 1.10215 1.57484 1.20713 0.92722 0.88799 0.98039 0.88226 0.88671 0.92666 0.92036 0.87961 0.95592 0.82548 0.94354 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.37 10.65 21.86 0.23 -41.14 15 2 C 0.01 0.66 5.50 85.28 0.47 1.13 15 3 Si 1.01 36.85 29.56 68.60 2.03 38.88 15 4 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 6 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 7 C -0.43 -23.46 9.29 23.12 0.21 -23.25 15 8 H 0.09 4.82 7.85 -2.91 -0.02 4.79 15 9 C 0.00 0.25 6.17 22.59 0.14 0.38 15 10 C -0.37 -20.41 10.02 22.00 0.22 -20.19 15 11 C -0.06 -3.06 5.82 -20.03 -0.12 -3.17 15 12 C -0.38 -18.51 6.44 25.45 0.16 -18.34 15 13 S 0.10 5.40 20.24 -56.49 -1.14 4.26 15 14 C -0.02 -0.67 6.50 30.23 0.20 -0.48 15 15 C 0.07 2.28 6.55 86.40 0.57 2.85 15 16 N -0.69 -22.76 6.78 -514.34 -3.49 -26.25 15 17 C 0.13 4.93 6.81 86.09 0.59 5.52 15 18 H 0.30 13.77 8.30 -92.71 -0.77 13.00 15 19 H 0.10 5.00 8.06 -2.91 -0.02 4.97 15 20 H 0.05 2.14 8.14 -2.39 -0.02 2.12 15 21 H 0.06 2.25 8.14 -2.39 -0.02 2.24 15 22 H 0.10 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.03 0.84 8.06 -2.39 -0.02 0.82 15 24 H 0.36 8.80 8.90 -89.70 -0.80 8.00 15 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 26 H 0.08 2.93 8.14 -2.38 -0.02 2.91 15 Total: -1.00 -62.52 233.53 0.46 -62.06 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.39 Total: 17.74 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 2.44 Total: -55.55 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -3.26 Total: -67.39 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.14 Total: 4.26 kcal Total: -62.52 0.46 -62.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597109.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.540 kcal (2) G-P(sol) polarization free energy of solvation -62.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds