Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48506 * 109.47184 * 239.99509 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99653 * 3 2 1 7 7 C 1.40059 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00159 * 180.28083 * 7 2 1 9 9 C 1.39955 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.39571 * 126.39257 * 0.02562 * 9 7 2 11 11 C 1.39568 * 107.02927 * 179.97438 * 10 9 7 12 12 C 1.35622 * 108.45468 * 359.79208 * 11 10 9 13 13 N 1.36991 * 108.48235 * 0.11129 * 12 11 10 14 14 H 0.97003 * 125.58968 * 179.88628 * 13 12 11 15 15 C 1.50803 * 128.12101 * 180.66839 * 12 11 10 16 16 C 1.52723 * 111.09494 * 339.99222 * 15 12 11 17 17 S 1.81857 * 108.78548 * 52.39433 * 16 15 12 18 18 C 1.51210 * 124.35298 * 179.45648 * 11 10 9 19 19 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 20 20 H 1.08000 * 126.49061 * 359.93865 * 10 9 7 21 21 H 1.08997 * 109.15419 * 100.40953 * 15 12 11 22 22 H 1.09008 * 109.15376 * 219.63293 * 15 12 11 23 23 H 1.09004 * 109.58386 * 172.18791 * 16 15 12 24 24 H 1.09001 * 109.58191 * 292.46237 * 16 15 12 25 25 H 1.09003 * 109.67435 * 282.41314 * 18 11 10 26 26 H 1.09000 * 109.67723 * 42.94820 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6966 1.2125 7 6 2.0089 -1.2129 0.0005 8 1 3.0889 -1.2129 0.0051 9 6 1.3091 -2.4250 0.0005 10 6 -0.0779 -2.5803 -0.0005 11 6 -0.3355 -3.9520 -0.0006 12 6 0.8496 -4.6114 -0.0045 13 7 1.8608 -3.6873 -0.0042 14 1 2.8097 -3.8887 -0.0049 15 6 1.0862 -6.1007 -0.0200 16 6 -0.1512 -6.8589 0.4559 17 16 -1.5880 -6.2981 -0.5075 18 6 -1.7199 -4.5602 0.0102 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8128 -1.7890 -0.0005 21 1 1.3290 -6.4137 -1.0354 22 1 1.9237 -6.3366 0.6367 23 1 -0.0048 -7.9285 0.3048 24 1 -0.3176 -6.6588 1.5143 25 1 -2.1360 -4.5076 1.0163 26 1 -2.3641 -4.0188 -0.6826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260635028.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = 23.342554 kcal Electronic energy + Delta-G solvation = -11495.797892 eV Core-core repulsion = 9472.321247 eV Total energy + Delta-G solvation = -2023.476645 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.27299 -33.99011 -32.67926 -31.17416 -28.00625 -26.21604 -24.64346 -21.89049 -19.45493 -17.83813 -17.09522 -15.92802 -15.25683 -14.70020 -13.83126 -13.36103 -12.98749 -12.53032 -12.32173 -12.15179 -11.83952 -11.42389 -11.32164 -11.09218 -10.94830 -10.48376 -9.88942 -9.80700 -9.24176 -9.22182 -7.17523 -7.10913 -6.69985 -6.48697 -4.15056 2.36563 3.00616 3.07025 3.11147 3.13182 3.68034 3.98137 4.44125 4.79349 5.34704 5.46646 5.47304 5.78165 6.03991 6.06987 6.14891 6.24837 6.44070 6.46450 7.18493 7.36531 7.73577 7.92505 8.23827 8.28730 8.88254 8.99403 9.21409 9.44506 10.40575 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.069883 B = 0.008523 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.572270 B = 3284.606493 C = 3629.653327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.457 4.457 8 H 0.067 0.933 9 C 0.218 3.782 10 C -0.280 4.280 11 C -0.145 4.145 12 C -0.096 4.096 13 N -0.595 5.595 14 H 0.389 0.611 15 C -0.029 4.029 16 C -0.063 4.063 17 S -0.296 6.296 18 C 0.015 3.985 19 H 0.275 0.725 20 H 0.156 0.844 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -6.018 1.020 6.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.143 4.143 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.492 4.492 8 H 0.085 0.915 9 C 0.108 3.892 10 C -0.304 4.304 11 C -0.155 4.155 12 C -0.203 4.203 13 N -0.197 5.197 14 H 0.223 0.777 15 C -0.068 4.068 16 C -0.211 4.211 17 S -0.070 6.070 18 C -0.133 4.133 19 H 0.086 0.914 20 H 0.173 0.827 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.263 -6.537 0.294 6.549 hybrid contribution 1.622 1.348 0.823 2.264 sum 1.359 -5.189 1.117 5.479 Atomic orbital electron populations 1.69740 1.07157 1.28043 1.38015 1.25594 0.94825 1.00527 0.93320 0.86180 0.79584 0.80220 0.79428 1.19347 1.20374 1.19377 1.18369 0.93665 0.88963 1.48222 0.91460 1.17996 0.91919 0.82305 0.97009 1.21634 0.94961 0.92696 1.21103 1.18706 0.90025 0.95397 1.11340 1.19163 0.88022 0.88726 1.24353 1.42025 1.06061 1.06124 1.65475 0.77727 1.19742 0.95850 0.90883 1.00330 1.23084 0.95221 1.01594 1.01231 1.86367 1.40970 1.15403 1.64211 1.21742 0.98324 0.90502 1.02755 0.91411 0.82704 0.92089 0.92486 0.88590 0.90182 0.90670 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.22 10.27 55.56 0.57 -20.65 15 2 C 0.07 1.88 5.50 -17.28 -0.10 1.78 15 3 Si 0.92 19.13 29.56 -169.99 -5.03 14.10 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.27 -5.51 7.11 56.52 0.40 -5.10 15 7 C -0.46 -12.22 9.45 -38.26 -0.36 -12.58 15 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 15 9 C 0.22 5.91 6.89 -84.06 -0.58 5.33 15 10 C -0.28 -7.63 9.69 -38.59 -0.37 -8.01 15 11 C -0.15 -3.51 5.86 -104.81 -0.61 -4.12 15 12 C -0.10 -2.17 6.83 -81.17 -0.55 -2.73 15 13 N -0.60 -13.98 6.15 -6.64 -0.04 -14.02 15 14 H 0.39 7.91 8.96 -40.82 -0.37 7.54 15 15 C -0.03 -0.51 6.05 -27.97 -0.17 -0.68 15 16 C -0.06 -1.00 6.47 37.02 0.24 -0.76 15 17 S -0.30 -5.40 22.29 -107.50 -2.40 -7.80 15 18 C 0.02 0.31 6.75 36.26 0.24 0.55 15 19 H 0.27 6.66 8.30 -40.82 -0.34 6.32 15 20 H 0.16 4.43 5.70 -52.49 -0.30 4.13 15 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.06 0.90 8.14 -51.92 -0.42 0.47 15 23 H 0.10 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.10 1.93 8.14 -51.93 -0.42 1.51 15 LS Contribution 232.73 15.07 3.51 3.51 Total: -1.00 -28.56 232.73 -8.39 -36.96 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -2.75 Total: 9.12 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.26 Total: -21.22 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.53 Total: -34.67 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.40 Total: -7.80 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.56 -8.39 -36.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635028.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.299 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds