Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48506 * 109.47184 * 239.99509 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99653 * 3 2 1 7 7 C 1.40059 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00159 * 180.28083 * 7 2 1 9 9 C 1.39955 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.39571 * 126.39257 * 0.02562 * 9 7 2 11 11 C 1.39568 * 107.02927 * 179.97438 * 10 9 7 12 12 C 1.35622 * 108.45468 * 359.79208 * 11 10 9 13 13 N 1.36991 * 108.48235 * 0.11129 * 12 11 10 14 14 H 0.97003 * 125.58968 * 179.88628 * 13 12 11 15 15 C 1.50803 * 128.12101 * 180.66839 * 12 11 10 16 16 C 1.52723 * 111.09494 * 339.99222 * 15 12 11 17 17 S 1.81857 * 108.78548 * 52.39433 * 16 15 12 18 18 C 1.51210 * 124.35298 * 179.45648 * 11 10 9 19 19 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 20 20 H 1.08000 * 126.49061 * 359.93865 * 10 9 7 21 21 H 1.08997 * 109.15419 * 100.40953 * 15 12 11 22 22 H 1.09008 * 109.15376 * 219.63293 * 15 12 11 23 23 H 1.09004 * 109.58386 * 172.18791 * 16 15 12 24 24 H 1.09001 * 109.58191 * 292.46237 * 16 15 12 25 25 H 1.09003 * 109.67435 * 282.41314 * 18 11 10 26 26 H 1.09000 * 109.67723 * 42.94820 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0963 1.6966 1.2125 7 6 2.0089 -1.2129 0.0005 8 1 3.0889 -1.2129 0.0051 9 6 1.3091 -2.4250 0.0005 10 6 -0.0779 -2.5803 -0.0005 11 6 -0.3355 -3.9520 -0.0006 12 6 0.8496 -4.6114 -0.0045 13 7 1.8608 -3.6873 -0.0042 14 1 2.8097 -3.8887 -0.0049 15 6 1.0862 -6.1007 -0.0200 16 6 -0.1512 -6.8589 0.4559 17 16 -1.5880 -6.2981 -0.5075 18 6 -1.7199 -4.5602 0.0102 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8128 -1.7890 -0.0005 21 1 1.3290 -6.4137 -1.0354 22 1 1.9237 -6.3366 0.6367 23 1 -0.0048 -7.9285 0.3048 24 1 -0.3176 -6.6588 1.5143 25 1 -2.1360 -4.5076 1.0163 26 1 -2.3641 -4.0188 -0.6826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635028.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = 6.539485 kcal Electronic energy + Delta-G solvation = -11496.526528 eV Core-core repulsion = 9472.321247 eV Total energy + Delta-G solvation = -2024.205281 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13047 -35.77868 -34.34356 -32.88882 -29.89732 -28.02276 -26.29990 -23.50648 -21.39315 -19.67163 -18.93961 -17.62571 -16.93017 -16.26849 -15.41445 -14.94031 -14.54599 -14.16761 -14.03857 -13.85372 -13.64087 -13.10840 -12.95501 -12.82709 -12.49923 -12.18445 -11.72136 -11.44989 -11.10617 -10.77219 -8.98858 -8.69750 -8.57833 -8.39197 -6.14674 0.94372 1.34463 1.40734 1.53420 1.60206 1.89345 2.23856 2.51260 3.05629 3.46281 4.05015 4.09325 4.36298 4.48224 4.54111 4.70666 4.78290 4.82311 5.05449 5.22084 5.49416 5.84444 5.98435 6.23356 6.36703 6.89496 7.04134 7.27052 7.57986 8.51785 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.069883 B = 0.008523 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.572270 B = 3284.606493 C = 3629.653327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.025 3.975 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.074 0.926 9 C 0.184 3.816 10 C -0.318 4.318 11 C -0.173 4.173 12 C -0.080 4.080 13 N -0.592 5.592 14 H 0.404 0.596 15 C -0.029 4.029 16 C -0.057 4.057 17 S -0.291 6.291 18 C 0.013 3.987 19 H 0.280 0.720 20 H 0.131 0.869 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.137 0.863 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -7.390 1.211 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.073 3.927 10 C -0.343 4.343 11 C -0.182 4.182 12 C -0.187 4.187 13 N -0.195 5.195 14 H 0.239 0.761 15 C -0.068 4.068 16 C -0.206 4.206 17 S -0.064 6.064 18 C -0.136 4.136 19 H 0.090 0.910 20 H 0.149 0.851 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.155 0.845 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.859 -7.932 0.485 7.993 hybrid contribution 1.270 1.640 0.760 2.209 sum 2.129 -6.292 1.244 6.758 Atomic orbital electron populations 1.69880 1.08775 1.29187 1.38528 1.26622 0.95688 1.04080 0.92356 0.85025 0.78176 0.75279 0.79682 1.18668 1.19575 1.18566 1.18751 0.94213 0.89846 1.49626 0.90759 1.18269 0.92354 0.83743 0.98303 1.21620 0.95162 0.94056 1.23452 1.19069 0.92466 0.94506 1.12151 1.20032 0.87198 0.91154 1.20317 1.42063 1.07134 1.05374 1.64926 0.76051 1.19900 0.97840 0.87152 1.01932 1.23249 0.92862 1.03502 1.00968 1.86343 1.42654 1.12658 1.64767 1.21628 0.96270 0.92507 1.03163 0.90977 0.85124 0.90924 0.89532 0.84537 0.89632 0.90041 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.91 10.27 21.85 0.22 -45.69 15 2 C 0.02 1.30 5.50 85.28 0.47 1.77 15 3 Si 1.00 39.47 29.56 68.60 2.03 41.49 15 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 7 C -0.49 -26.79 9.45 23.13 0.22 -26.57 15 8 H 0.07 3.78 7.85 -2.91 -0.02 3.76 15 9 C 0.18 10.23 6.89 38.95 0.27 10.50 15 10 C -0.32 -18.08 9.69 22.91 0.22 -17.85 15 11 C -0.17 -8.42 5.86 -19.99 -0.12 -8.53 15 12 C -0.08 -3.49 6.83 41.18 0.28 -3.21 15 13 N -0.59 -27.59 6.15 -174.92 -1.08 -28.66 15 14 H 0.40 15.96 8.96 -92.71 -0.83 15.12 15 15 C -0.03 -0.91 6.05 29.79 0.18 -0.73 15 16 C -0.06 -1.60 6.47 71.89 0.47 -1.13 15 17 S -0.29 -9.94 22.29 -56.49 -1.26 -11.19 15 18 C 0.01 0.52 6.75 71.40 0.48 1.00 15 19 H 0.28 14.02 8.30 -92.70 -0.77 13.25 15 20 H 0.13 7.96 5.70 -2.91 -0.02 7.95 15 21 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.09 2.31 8.14 -2.38 -0.02 2.29 15 23 H 0.14 2.80 8.14 -2.39 -0.02 2.78 15 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.08 3.14 8.14 -2.39 -0.02 3.12 15 26 H 0.09 3.71 8.14 -2.39 -0.02 3.69 15 Total: -1.00 -63.20 232.73 2.75 -60.45 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.36 Total: 28.37 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 2.47 Total: -44.76 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -0.85 Total: -74.35 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: -9.94 SS G_CDS: -1.26 Total: -11.19 kcal Total: -63.20 2.75 -60.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635028.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.988 kcal (2) G-P(sol) polarization free energy of solvation -63.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds