Wall clock time and date at job start Mon Mar 30 2020 02:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99454 * 2 1 4 4 H 1.48494 * 109.47164 * 269.99766 * 3 2 1 5 5 H 1.48499 * 109.46884 * 30.00216 * 3 2 1 6 6 H 1.48507 * 109.46844 * 149.99679 * 3 2 1 7 7 C 1.37873 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 11 11 C 1.52997 * 109.47265 * 299.99767 * 9 7 2 12 12 C 1.53002 * 109.47092 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.46969 * 60.00060 * 12 11 9 14 14 C 1.52992 * 109.47224 * 299.99553 * 13 12 11 15 15 H 1.09002 * 109.47103 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47482 * 300.00294 * 14 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 14 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 C 1.52999 * 109.46961 * 60.00654 * 14 13 12 21 21 H 1.09000 * 109.47486 * 59.99547 * 20 14 13 22 22 H 0.96992 * 120.00516 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47045 * 60.00159 * 11 9 7 24 24 H 1.09000 * 109.47140 * 300.00252 * 11 9 7 25 25 H 1.09004 * 109.47059 * 299.99666 * 12 11 9 26 26 H 1.09004 * 109.46930 * 180.02562 * 12 11 9 27 27 H 1.09001 * 109.46997 * 179.97438 * 13 12 11 28 28 H 1.08996 * 109.47134 * 60.00388 * 13 12 11 29 29 H 1.09002 * 109.47153 * 59.99783 * 16 14 13 30 30 H 1.09001 * 109.46832 * 299.99974 * 16 14 13 31 31 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 32 32 H 1.09004 * 109.46724 * 180.02562 * 17 16 14 33 33 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 36 36 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8745 -0.6806 0.8905 11 6 4.0220 -0.4718 -1.2485 12 6 5.5520 -0.4723 -1.2482 13 6 6.0616 -1.9149 -1.2492 14 6 5.5512 -2.6369 -0.0007 15 1 5.9146 -3.6646 -0.0012 16 6 6.0612 -1.9168 1.2492 17 6 5.5513 -2.6393 2.4978 18 6 4.0212 -2.6394 2.4979 19 6 3.5113 -3.3595 1.2480 20 6 4.0212 -2.6365 -0.0010 21 1 3.6579 -3.1496 -0.8914 22 1 -0.4850 0.8399 -0.0004 23 1 3.6586 0.5559 -1.2480 24 1 3.6591 -0.9851 -2.1390 25 1 5.9154 0.0408 -0.3577 26 1 5.9157 0.0426 -2.1375 27 1 7.1516 -1.9152 -1.2495 28 1 5.6983 -2.4279 -2.1397 29 1 5.6981 -0.8890 1.2500 30 1 7.1512 -1.9172 1.2494 31 1 5.9146 -3.6669 2.4968 32 1 5.9142 -2.1260 3.3882 33 1 3.6579 -3.1537 3.3875 34 1 3.6579 -1.6118 2.4987 35 1 3.8746 -4.3872 1.2470 36 1 2.4213 -3.3592 1.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260737549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:18 Heat of formation + Delta-G solvation = -52.471236 kcal Electronic energy + Delta-G solvation = -15012.475848 eV Core-core repulsion = 12880.050899 eV Total energy + Delta-G solvation = -2132.424949 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09455 -36.01232 -34.95103 -32.88968 -30.94918 -29.65823 -26.56380 -24.15991 -23.05722 -22.56373 -21.19127 -18.80365 -18.58643 -16.82276 -16.18526 -15.60472 -15.42495 -15.10970 -14.97609 -14.34823 -13.81206 -13.54384 -13.30092 -13.14257 -12.78452 -12.69540 -12.45540 -12.12077 -11.91659 -11.80689 -11.60979 -11.40981 -11.35054 -11.01871 -10.73662 -10.46090 -10.32209 -10.24490 -8.24686 -6.24090 1.28419 1.33276 1.43814 2.34323 3.11462 3.84554 3.94785 3.98043 4.27711 4.30196 4.43547 4.51305 4.65963 4.68507 4.74615 4.79310 4.86890 4.90694 4.93533 5.01110 5.06790 5.15044 5.26516 5.28013 5.35927 5.40963 5.50273 5.51581 5.56250 5.63141 5.71302 5.79079 5.86662 5.99112 6.43301 6.83643 7.39704 8.92514 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.031520 B = 0.014786 C = 0.012379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.099575 B = 1893.232010 C = 2261.277091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.305 1.305 6 H -0.247 1.247 7 C -0.498 4.498 8 H 0.033 0.967 9 C 0.023 3.977 10 H 0.030 0.970 11 C -0.125 4.125 12 C -0.119 4.119 13 C -0.105 4.105 14 C -0.078 4.078 15 H 0.078 0.922 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.064 4.064 21 H 0.041 0.959 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.390 -3.636 1.476 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.233 1.233 6 H -0.170 1.170 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.004 3.996 10 H 0.048 0.952 11 C -0.163 4.163 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.096 4.096 15 H 0.097 0.903 16 C -0.153 4.153 17 C -0.147 4.147 18 C -0.155 4.155 19 C -0.140 4.140 20 C -0.083 4.083 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 15.255 -3.543 1.478 15.731 hybrid contribution -0.924 0.967 -0.187 1.350 sum 14.332 -2.577 1.291 14.619 Atomic orbital electron populations 1.70059 1.08123 1.27489 1.54170 1.25828 0.95284 1.02675 0.95069 0.85902 0.79215 0.79379 0.78228 1.19943 1.23289 1.17049 1.21485 0.92009 0.92413 1.47761 0.94854 1.19154 0.92666 0.94065 0.93677 0.95245 1.21928 0.96076 0.98297 0.99962 1.21616 0.94346 0.98120 1.01581 1.21503 1.00615 0.94606 0.97526 1.21142 0.93880 0.99557 0.95051 0.90326 1.21662 1.00378 0.99197 0.94069 1.21485 0.94162 1.01162 0.97858 1.21484 0.96826 1.00050 0.97168 1.21399 0.99208 0.98271 0.95103 1.20949 0.94952 0.95724 0.96651 0.94058 0.93019 0.95612 0.93604 0.92063 0.91614 0.89910 0.92414 0.93219 0.90299 0.90843 0.91503 0.92246 0.94093 0.91714 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.51 13.96 21.45 0.30 -61.21 16 2 C 0.01 0.41 5.45 84.65 0.46 0.87 16 3 Si 0.94 46.76 24.37 68.60 1.67 48.43 16 4 H -0.27 -13.03 6.87 99.48 0.68 -12.35 16 5 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.25 -11.29 6.53 99.48 0.65 -10.64 16 7 C -0.50 -28.57 8.41 25.60 0.22 -28.35 16 8 H 0.03 2.12 6.95 -2.91 -0.02 2.10 16 9 C 0.02 1.05 0.61 -11.54 -0.01 1.04 16 10 H 0.03 1.39 3.87 -2.39 -0.01 1.38 16 11 C -0.13 -5.28 4.68 30.59 0.14 -5.14 16 12 C -0.12 -3.82 5.65 30.59 0.17 -3.64 16 13 C -0.11 -2.86 5.45 30.59 0.17 -2.70 16 14 C -0.08 -2.28 2.46 -10.80 -0.03 -2.31 16 15 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 16 C -0.12 -3.17 4.59 30.59 0.14 -3.03 16 17 C -0.11 -2.90 5.92 30.60 0.18 -2.72 16 18 C -0.12 -4.00 5.65 30.59 0.17 -3.83 16 19 C -0.10 -3.82 5.20 30.61 0.16 -3.66 16 20 C -0.06 -2.47 1.95 -10.77 -0.02 -2.49 16 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.03 1.16 3.27 -2.39 -0.01 1.15 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 25 H 0.06 1.92 6.43 -2.39 -0.02 1.90 16 26 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.58 4.81 -2.39 -0.01 1.57 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.64 6.43 -2.39 -0.02 1.63 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.47 6.62 -2.39 -0.02 1.45 16 Total: -1.00 -65.03 251.12 4.69 -60.34 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.96 Total: 8.40 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 1.76 Total: -55.96 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.30 Total: -61.21 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -65.03 4.69 -60.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.868 kcal (2) G-P(sol) polarization free energy of solvation -65.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds