Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48504 * 109.47402 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47357 * 240.00042 * 3 2 1 6 6 H 1.48507 * 109.47502 * 119.99778 * 3 2 1 7 7 C 1.37880 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99467 * 18.71402 * 7 2 1 9 9 C 1.50699 * 120.00209 * 198.71557 * 7 2 1 10 10 H 1.08995 * 109.71525 * 305.07325 * 9 7 2 11 11 C 1.53162 * 109.71892 * 65.68428 * 9 7 2 12 12 N 1.46976 * 109.48026 * 170.12811 * 11 9 7 13 13 C 1.47107 * 110.91020 * 288.13832 * 12 11 9 14 14 C 1.51337 * 108.53591 * 51.01813 * 13 12 11 15 15 S 1.75660 * 125.89943 * 163.84640 * 14 13 12 16 16 C 1.75783 * 91.06453 * 180.09901 * 15 14 13 17 17 C 1.33030 * 109.61159 * 359.92569 * 16 15 14 18 18 C 1.34797 * 124.15559 * 343.83965 * 14 13 12 19 19 H 0.96998 * 119.99860 * 174.65248 * 1 2 3 20 20 H 1.08997 * 109.46711 * 290.12764 * 11 9 7 21 21 H 1.08999 * 109.46590 * 50.12661 * 11 9 7 22 22 H 1.00893 * 110.99956 * 164.24814 * 12 11 9 23 23 H 1.09003 * 109.62339 * 170.72852 * 13 12 11 24 24 H 1.09003 * 109.62830 * 291.30286 * 13 12 11 25 25 H 1.08006 * 125.19272 * 179.97438 * 16 15 14 26 26 H 1.08000 * 122.19220 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 1.5074 -2.1047 -0.2991 9 6 3.4518 -1.2283 0.4193 10 1 4.0248 -0.5205 -0.1796 11 6 3.5694 -0.8645 1.9024 12 7 4.9399 -1.1266 2.3642 13 6 5.1931 -2.5723 2.4632 14 6 4.7887 -3.2220 1.1576 15 16 5.2502 -4.8296 0.6207 16 6 4.3472 -4.6255 -0.8736 17 6 3.7753 -3.4245 -0.8892 18 6 4.0089 -2.6333 0.2290 19 1 -0.4850 -0.8364 -0.0783 20 1 3.3365 0.1918 2.0369 21 1 2.8695 -1.4674 2.4810 22 1 5.1189 -0.6671 3.2444 23 1 6.2535 -2.7465 2.6457 24 1 4.6045 -2.9922 3.2788 25 1 4.2681 -5.3629 -1.6588 26 1 3.1692 -3.0865 -1.7168 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = 11.070224 kcal Electronic energy + Delta-G solvation = -11727.784996 eV Core-core repulsion = 9703.776183 eV Total energy + Delta-G solvation = -2024.008813 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 209.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.12648 -36.57461 -35.17119 -32.09327 -30.61544 -26.66352 -25.07472 -23.58806 -21.91374 -19.80527 -18.86332 -18.15638 -16.50187 -16.35431 -15.65102 -15.44293 -15.22677 -14.56020 -13.86287 -13.61680 -13.45052 -13.28975 -12.76973 -12.51529 -12.29135 -11.93085 -11.73892 -11.38404 -10.88289 -10.44452 -9.65182 -9.24121 -9.11208 -8.71172 -6.37510 0.12683 0.77699 1.07409 1.46213 1.54659 1.74474 1.90627 2.47426 3.03653 3.40862 3.89238 4.11386 4.33073 4.40456 4.46042 4.69581 4.71441 4.83494 5.08319 5.20667 5.34937 5.50099 5.59044 5.93722 6.02604 6.16299 6.56630 6.59180 7.39366 8.62143 Molecular weight = 209.06amu Principal moments of inertia in cm(-1) A = 0.041352 B = 0.012096 C = 0.010202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.950574 B = 2314.254449 C = 2743.911599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 1.084 2.916 4 H -0.288 1.288 5 H -0.269 1.269 6 H -0.239 1.239 7 C -0.593 4.593 8 H 0.019 0.981 9 C 0.079 3.921 10 H 0.034 0.966 11 C 0.060 3.940 12 N -0.688 5.688 13 C 0.136 3.864 14 C -0.222 4.222 15 S 0.124 5.876 16 C -0.217 4.217 17 C -0.139 4.139 18 C -0.089 4.089 19 H 0.251 0.749 20 H 0.074 0.926 21 H 0.010 0.990 22 H 0.356 0.644 23 H 0.111 0.889 24 H 0.049 0.951 25 H 0.189 0.811 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 -5.851 3.816 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.215 4.215 3 Si 0.906 3.094 4 H -0.214 1.214 5 H -0.194 1.194 6 H -0.164 1.164 7 C -0.631 4.631 8 H 0.037 0.963 9 C 0.057 3.943 10 H 0.052 0.948 11 C -0.069 4.069 12 N -0.321 5.321 13 C 0.005 3.995 14 C -0.339 4.339 15 S 0.387 5.613 16 C -0.352 4.352 17 C -0.170 4.170 18 C -0.100 4.100 19 H 0.060 0.940 20 H 0.092 0.908 21 H 0.029 0.971 22 H 0.176 0.824 23 H 0.129 0.871 24 H 0.067 0.933 25 H 0.206 0.794 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.369 -5.373 3.876 14.920 hybrid contribution -2.089 -1.000 -0.330 2.339 sum 11.280 -6.373 3.546 13.432 Atomic orbital electron populations 1.70997 1.08162 1.29954 1.47917 1.27198 0.96013 1.06092 0.92173 0.83566 0.74740 0.71597 0.79547 1.21443 1.19403 1.16393 1.22033 0.96732 0.94863 1.49509 0.96250 1.18040 0.93822 0.89458 0.92966 0.94814 1.22366 0.87281 1.00355 0.96910 1.60485 1.26107 1.09959 1.35572 1.20566 1.01565 0.87149 0.90173 1.25032 1.06937 0.99320 1.02612 1.83224 1.52110 1.12765 1.13250 1.25659 1.05532 1.01192 1.02825 1.20100 1.02222 0.94856 0.99830 1.19998 0.97432 0.98611 0.93994 0.93972 0.90776 0.97133 0.82391 0.87118 0.93303 0.79378 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.54 13.69 21.45 0.29 -58.24 15 2 C -0.02 -0.95 5.34 84.66 0.45 -0.50 15 3 Si 1.08 49.79 26.56 68.60 1.82 51.61 15 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.24 -9.65 5.46 99.48 0.54 -9.10 15 7 C -0.59 -34.10 8.44 25.60 0.22 -33.88 15 8 H 0.02 1.23 7.61 -2.91 -0.02 1.20 15 9 C 0.08 3.85 2.18 -11.71 -0.03 3.82 15 10 H 0.03 1.69 6.82 -2.39 -0.02 1.68 15 11 C 0.06 2.59 5.46 86.34 0.47 3.06 15 12 N -0.69 -23.47 6.85 -515.85 -3.53 -27.00 15 13 C 0.14 4.23 6.92 85.72 0.59 4.82 15 14 C -0.22 -8.23 6.43 25.10 0.16 -8.07 15 15 S 0.12 3.65 23.32 -56.49 -1.32 2.33 15 16 C -0.22 -7.09 11.21 66.66 0.75 -6.34 15 17 C -0.14 -5.78 9.20 21.28 0.20 -5.58 15 18 C -0.09 -3.93 5.40 -19.96 -0.11 -4.04 15 19 H 0.25 16.04 8.73 -92.71 -0.81 15.24 15 20 H 0.07 3.17 4.95 -2.39 -0.01 3.16 15 21 H 0.01 0.48 8.03 -2.39 -0.02 0.46 15 22 H 0.36 9.58 8.90 -89.70 -0.80 8.78 15 23 H 0.11 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.19 4.73 8.06 -2.91 -0.02 4.71 15 26 H 0.12 5.24 7.96 -2.91 -0.02 5.22 15 Total: -1.00 -66.29 228.00 0.16 -66.13 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.19 Total: 11.87 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 2.70 Total: -46.70 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.24 Total: -85.25 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.82 Total: 51.61 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.32 Total: 2.33 kcal Total: -66.29 0.16 -66.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.201 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds