Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47659 * 2 1 4 4 C 1.50703 * 109.47049 * 120.00507 * 2 1 3 5 5 C 1.39878 * 125.89476 * 274.71237 * 4 2 1 6 6 C 1.35317 * 107.91742 * 179.86589 * 5 4 2 7 7 N 1.34940 * 107.74994 * 0.39145 * 6 5 4 8 8 C 1.46501 * 126.04127 * 179.74981 * 7 6 5 9 9 H 1.08998 * 109.46767 * 154.97659 * 8 7 6 10 10 C 1.52992 * 109.46677 * 34.97764 * 8 7 6 11 11 C 1.50703 * 109.46988 * 274.97782 * 8 7 6 12 12 H 1.07995 * 119.99882 * 35.00069 * 11 8 7 13 13 C 1.37878 * 119.99945 * 214.99512 * 11 8 7 14 14 N 1.31508 * 120.00253 * 184.91444 * 13 11 8 15 15 Si 1.86805 * 119.99660 * 4.91373 * 13 11 8 16 16 H 1.48501 * 109.46795 * 84.82733 * 15 13 11 17 17 H 1.48504 * 109.46929 * 204.82475 * 15 13 11 18 18 H 1.48499 * 109.47304 * 324.82792 * 15 13 11 19 19 N 1.30832 * 125.90417 * 95.02072 * 4 2 1 20 20 H 1.09002 * 109.47369 * 300.00180 * 1 2 3 21 21 H 1.08996 * 109.47847 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47408 * 59.99785 * 1 2 3 23 23 H 1.09002 * 109.47114 * 239.99333 * 2 1 3 24 24 H 1.09002 * 109.46877 * 59.99518 * 3 2 1 25 25 H 1.08999 * 109.47806 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46886 * 300.00534 * 3 2 1 27 27 H 1.08006 * 126.04029 * 359.97438 * 5 4 2 28 28 H 1.07998 * 126.11941 * 180.14616 * 6 5 4 29 29 H 1.09002 * 109.47642 * 54.93291 * 10 8 7 30 30 H 1.09000 * 109.47339 * 174.93202 * 10 8 7 31 31 H 1.09003 * 109.47710 * 294.93435 * 10 8 7 32 32 H 0.96994 * 120.00171 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 2.2178 -0.1347 2.4916 6 6 2.6764 -1.0970 3.3252 7 7 2.7856 -2.2390 2.6146 8 6 3.2511 -3.5308 3.1253 9 1 2.8362 -4.3333 2.5155 10 6 2.7914 -3.7017 4.5745 11 6 4.7561 -3.5815 3.0663 12 1 5.3340 -2.6871 3.2463 13 6 5.3952 -4.7699 2.7827 14 7 6.7078 -4.8372 2.8261 15 14 4.3965 -6.2842 2.3368 16 1 4.0881 -6.2637 0.8843 17 1 5.1777 -7.5051 2.6598 18 1 3.1297 -6.2876 3.1118 19 7 2.3754 -1.9710 1.3022 20 1 -0.3634 0.5139 0.8900 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9562 -0.8899 27 1 2.0270 0.8954 2.7542 28 1 2.9161 -0.9723 4.3708 29 1 1.7101 -3.5753 4.6301 30 1 3.0592 -4.6983 4.9255 31 1 3.2772 -2.9533 5.2006 32 1 7.1574 -5.6733 2.6270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = 36.025435 kcal Electronic energy + Delta-G solvation = -13606.086034 eV Core-core repulsion = 11373.958246 eV Total energy + Delta-G solvation = -2232.127789 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.96830 -37.18434 -35.60466 -33.78427 -30.89699 -29.77083 -27.90793 -27.46018 -24.13263 -23.12072 -21.01430 -19.96121 -19.17325 -17.94487 -16.44057 -16.03000 -15.36571 -15.07526 -14.77967 -14.52112 -14.25991 -13.97670 -13.64856 -13.25451 -13.06338 -12.81185 -12.75313 -12.33921 -12.15570 -12.00564 -11.93145 -11.86068 -11.51438 -11.20938 -10.91302 -10.00636 -9.21698 -8.47747 -6.57558 1.23871 1.26298 1.31143 1.37505 1.92035 2.05945 2.19638 2.91572 3.76251 3.98306 4.18442 4.23985 4.36071 4.41192 4.58778 4.61181 4.84283 4.87607 4.92859 4.95674 4.99717 5.06700 5.20182 5.29593 5.32067 5.35277 5.46696 5.58544 5.91486 6.08827 6.44752 6.50582 7.06700 7.13791 8.68364 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.042312 B = 0.008546 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.598870 B = 3275.773159 C = 3356.232522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.016 4.016 3 C -0.132 4.132 4 C 0.055 3.945 5 C -0.288 4.288 6 C 0.046 3.954 7 N -0.351 5.351 8 C 0.243 3.757 9 H 0.050 0.950 10 C -0.140 4.140 11 C -0.536 4.536 12 H 0.033 0.967 13 C 0.028 3.972 14 N -0.930 5.930 15 Si 0.938 3.062 16 H -0.276 1.276 17 H -0.271 1.271 18 H -0.236 1.236 19 N -0.355 5.355 20 H 0.064 0.936 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.167 0.833 28 H 0.185 0.815 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.529 8.141 -1.054 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.037 4.037 3 C -0.190 4.190 4 C -0.110 4.110 5 C -0.318 4.318 6 C -0.102 4.102 7 N -0.131 5.131 8 C 0.143 3.857 9 H 0.068 0.932 10 C -0.199 4.199 11 C -0.574 4.574 12 H 0.052 0.948 13 C -0.172 4.172 14 N -0.568 5.568 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.196 1.196 18 H -0.159 1.159 19 N -0.178 5.178 20 H 0.083 0.917 21 H 0.056 0.944 22 H 0.103 0.897 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.184 0.816 28 H 0.202 0.798 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.187 6.754 -1.630 14.028 hybrid contribution 0.489 -0.197 0.264 0.590 sum -11.697 6.557 -1.367 13.479 Atomic orbital electron populations 1.21713 0.92420 1.01393 1.03240 1.19615 0.96889 0.95820 0.91332 1.21747 1.00407 0.93383 1.03465 1.22826 0.99335 0.91288 0.97540 1.21484 1.16252 1.01336 0.92683 1.22932 1.00556 0.86682 1.00049 1.49487 1.47409 1.10259 1.05991 1.19457 0.93162 0.79378 0.93657 0.93204 1.22125 0.99976 1.03253 0.94581 1.21225 0.90072 0.96352 1.49793 0.94821 1.25823 0.95874 1.02080 0.93466 1.69997 1.09673 1.28542 1.48605 0.85895 0.80085 0.78460 0.79548 1.20197 1.19625 1.15878 1.77143 1.22437 1.18689 0.99551 0.91733 0.94364 0.89695 0.91550 0.91111 0.94007 0.89862 0.81560 0.79803 0.92073 0.90807 0.91559 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.17 71.98 0.66 -2.30 16 2 C -0.02 -0.46 3.38 -11.54 -0.04 -0.50 16 3 C -0.13 -2.93 8.78 71.98 0.63 -2.30 16 4 C 0.06 2.09 6.13 43.11 0.26 2.35 16 5 C -0.29 -10.01 9.97 21.99 0.22 -9.79 16 6 C 0.05 1.79 10.60 83.54 0.89 2.67 16 7 N -0.35 -16.28 3.51 -331.08 -1.16 -17.44 16 8 C 0.24 11.68 2.97 44.24 0.13 11.81 16 9 H 0.05 2.46 5.29 -2.39 -0.01 2.44 16 10 C -0.14 -5.39 8.70 71.98 0.63 -4.76 16 11 C -0.54 -30.77 9.19 25.60 0.24 -30.53 16 12 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 13 C 0.03 1.63 5.47 84.66 0.46 2.09 16 14 N -0.93 -57.09 13.96 21.45 0.30 -56.79 16 15 Si 0.94 43.34 26.99 68.60 1.85 45.20 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.24 -9.75 6.82 99.48 0.68 -9.07 16 19 N -0.36 -16.67 12.58 -47.38 -0.60 -17.27 16 20 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.39 7.30 -2.39 -0.02 1.37 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.17 4.49 7.42 -2.91 -0.02 4.46 16 28 H 0.18 5.96 7.40 -2.91 -0.02 5.93 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 2.40 7.42 -2.39 -0.02 2.39 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -69.33 268.78 5.52 -63.81 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.05 Total: 13.75 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.08 Total: -31.25 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.46 Total: -91.50 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.85 Total: 45.20 kcal Total: -69.33 5.52 -63.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.834 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds