Wall clock time and date at job start Mon Mar 30 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.39867 * 125.90117 * 84.99772 * 4 2 1 6 6 C 1.35312 * 107.92326 * 180.02562 * 5 4 2 7 7 N 1.34955 * 107.74302 * 359.97438 * 6 5 4 8 8 C 1.46498 * 126.03594 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47072 * 205.00107 * 8 7 6 10 10 C 1.53010 * 109.47002 * 324.99289 * 8 7 6 11 11 C 1.50695 * 109.47492 * 84.99766 * 8 7 6 12 12 H 1.08001 * 120.00324 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00025 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99881 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99987 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47110 * 119.99861 * 15 13 11 18 18 H 1.48498 * 109.47096 * 239.99402 * 15 13 11 19 19 N 1.30840 * 125.89224 * 264.69147 * 4 2 1 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.08005 * 126.03929 * 359.97438 * 5 4 2 28 28 H 1.07994 * 126.13256 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46539 * 60.00492 * 10 8 7 30 30 H 1.08997 * 109.47027 * 180.02562 * 10 8 7 31 31 H 1.08994 * 109.46896 * 300.00550 * 10 8 7 32 32 H 0.97006 * 119.99308 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.2126 -0.1359 -2.4930 6 6 2.6755 -1.0969 -3.3256 7 7 2.7848 -2.2390 -2.6149 8 6 3.2498 -3.5308 -3.1259 9 1 2.8354 -4.3334 -2.5157 10 6 2.7890 -3.7020 -4.5748 11 6 4.7548 -3.5816 -3.0680 12 1 5.3096 -2.7361 -2.6890 13 6 5.4237 -4.7073 -3.5000 14 7 4.7482 -5.7368 -3.9620 15 14 7.2892 -4.7706 -3.4276 16 1 7.8065 -3.4947 -2.8712 17 1 7.7129 -5.8979 -2.5588 18 1 7.8312 -4.9693 -4.7958 19 7 2.3805 -1.9696 -1.3010 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 2.0162 0.8929 -2.7570 28 1 2.9146 -0.9724 -4.3713 29 1 3.2034 -2.8994 -5.1850 30 1 3.1346 -4.6633 -4.9548 31 1 1.7004 -3.6652 -4.6166 32 1 5.2188 -6.5289 -4.2656 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260820925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:20 Heat of formation + Delta-G solvation = 54.046155 kcal Electronic energy + Delta-G solvation = -13559.931933 eV Core-core repulsion = 11328.585582 eV Total energy + Delta-G solvation = -2231.346351 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.33614 -35.63923 -34.03668 -31.37204 -29.24692 -27.77408 -26.88450 -25.41857 -22.61395 -21.67800 -19.34610 -18.40169 -16.72687 -15.97136 -14.82260 -14.38083 -13.89676 -13.81404 -13.14216 -12.74396 -12.53902 -12.20718 -11.92148 -11.73804 -11.26904 -11.08960 -10.99696 -10.84293 -10.74529 -10.67008 -10.37136 -10.26844 -9.64476 -9.44108 -8.63068 -8.30513 -7.58617 -6.25445 -4.34733 2.91911 3.18812 3.26966 3.32652 3.55958 3.67565 4.28860 5.05064 5.09639 5.20752 5.45946 5.69135 5.77440 5.82034 6.01589 6.07031 6.12111 6.28402 6.36281 6.47086 6.50443 6.58491 6.64628 6.69216 6.94350 7.24804 7.45921 7.60694 7.72118 7.96250 8.16501 8.69174 8.79813 9.32603 10.79495 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.047594 B = 0.007846 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.171567 B = 3567.891420 C = 3798.467697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 C -0.138 4.138 4 C 0.049 3.951 5 C -0.298 4.298 6 C 0.059 3.941 7 N -0.324 5.324 8 C 0.274 3.726 9 H 0.060 0.940 10 C -0.149 4.149 11 C -0.529 4.529 12 H 0.064 0.936 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.281 1.281 19 N -0.301 5.301 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.161 0.839 29 H 0.039 0.961 30 H 0.106 0.894 31 H 0.020 0.980 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 9.420 2.426 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.196 4.196 4 C -0.115 4.115 5 C -0.328 4.328 6 C -0.091 4.091 7 N -0.103 5.103 8 C 0.176 3.824 9 H 0.078 0.922 10 C -0.208 4.208 11 C -0.568 4.568 12 H 0.082 0.918 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.734 3.266 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.207 1.207 19 N -0.124 5.124 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.178 0.822 29 H 0.058 0.942 30 H 0.124 0.876 31 H 0.039 0.961 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.891 7.949 2.927 9.781 hybrid contribution 1.018 0.593 -0.635 1.339 sum -3.873 8.542 2.292 9.655 Atomic orbital electron populations 1.21768 0.94561 1.01921 1.01312 1.19352 0.95188 0.94750 0.93760 1.21771 1.01283 0.95151 1.01390 1.21987 1.01647 0.92300 0.95586 1.21044 1.17917 1.00201 0.93625 1.22340 1.00878 0.87172 0.98758 1.49566 1.45347 1.10183 1.05219 1.19257 0.94859 0.76455 0.91864 0.92223 1.22149 0.96876 1.04653 0.97132 1.21346 0.89863 1.02123 1.43424 0.91804 1.24891 0.99338 0.94970 0.94406 1.69861 1.35736 1.05175 1.41944 0.86289 0.84146 0.78324 0.77863 1.19635 1.20631 1.20651 1.77206 1.20209 1.16046 0.98985 0.92690 0.92645 0.92574 0.90504 0.92737 0.92575 0.92362 0.85153 0.82191 0.94236 0.87613 0.96060 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.18 37.16 0.34 -1.46 16 2 C -0.01 -0.15 3.38 -91.77 -0.31 -0.46 16 3 C -0.14 -1.73 8.78 37.16 0.33 -1.40 16 4 C 0.05 0.97 6.13 -82.40 -0.50 0.47 16 5 C -0.30 -5.60 9.97 -40.02 -0.40 -6.00 16 6 C 0.06 1.22 10.59 -17.22 -0.18 1.03 16 7 N -0.32 -7.74 3.51 -55.99 -0.20 -7.94 16 8 C 0.27 7.06 3.31 -69.08 -0.23 6.83 16 9 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 10 C -0.15 -3.45 8.61 37.16 0.32 -3.13 16 11 C -0.53 -14.59 8.84 -34.44 -0.30 -14.89 16 12 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 13 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 14 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 15 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 N -0.30 -7.12 12.58 33.67 0.42 -6.70 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.69 7.30 -51.93 -0.38 0.31 16 27 H 0.13 2.05 7.43 -52.48 -0.39 1.66 16 28 H 0.16 2.90 7.26 -52.49 -0.38 2.52 16 29 H 0.04 0.85 7.16 -51.93 -0.37 0.48 16 30 H 0.11 2.63 6.07 -51.93 -0.32 2.32 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -29.09 268.83 -5.92 -35.01 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.76 Total: 0.58 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.04 Total: -17.31 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.85 Total: -38.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.09 -5.92 -35.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.055 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds