Wall clock time and date at job start Mon Mar 30 2020 02:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.39867 * 125.90117 * 84.99772 * 4 2 1 6 6 C 1.35312 * 107.92326 * 180.02562 * 5 4 2 7 7 N 1.34955 * 107.74302 * 359.97438 * 6 5 4 8 8 C 1.46498 * 126.03594 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47072 * 205.00107 * 8 7 6 10 10 C 1.53010 * 109.47002 * 324.99289 * 8 7 6 11 11 C 1.50695 * 109.47492 * 84.99766 * 8 7 6 12 12 H 1.08001 * 120.00324 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00025 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99881 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99987 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.46969 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47110 * 119.99861 * 15 13 11 18 18 H 1.48498 * 109.47096 * 239.99402 * 15 13 11 19 19 N 1.30840 * 125.89224 * 264.69147 * 4 2 1 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.08005 * 126.03929 * 359.97438 * 5 4 2 28 28 H 1.07994 * 126.13256 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46539 * 60.00492 * 10 8 7 30 30 H 1.08997 * 109.47027 * 180.02562 * 10 8 7 31 31 H 1.08994 * 109.46896 * 300.00550 * 10 8 7 32 32 H 0.97006 * 119.99308 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.2126 -0.1359 -2.4930 6 6 2.6755 -1.0969 -3.3256 7 7 2.7848 -2.2390 -2.6149 8 6 3.2498 -3.5308 -3.1259 9 1 2.8354 -4.3334 -2.5157 10 6 2.7890 -3.7020 -4.5748 11 6 4.7548 -3.5816 -3.0680 12 1 5.3096 -2.7361 -2.6890 13 6 5.4237 -4.7073 -3.5000 14 7 4.7482 -5.7368 -3.9620 15 14 7.2892 -4.7706 -3.4276 16 1 7.8065 -3.4947 -2.8712 17 1 7.7129 -5.8979 -2.5588 18 1 7.8312 -4.9693 -4.7958 19 7 2.3805 -1.9696 -1.3010 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 2.0162 0.8929 -2.7570 28 1 2.9146 -0.9724 -4.3713 29 1 3.2034 -2.8994 -5.1850 30 1 3.1346 -4.6633 -4.9548 31 1 1.7004 -3.6652 -4.6166 32 1 5.2188 -6.5289 -4.2656 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:20 Heat of formation + Delta-G solvation = 37.167044 kcal Electronic energy + Delta-G solvation = -13560.663867 eV Core-core repulsion = 11328.585582 eV Total energy + Delta-G solvation = -2232.078285 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.95782 -37.17763 -35.71175 -33.26619 -30.86875 -29.47420 -27.90267 -27.46043 -24.21480 -23.18567 -21.09680 -19.85445 -18.70598 -17.78767 -16.49890 -15.96847 -15.54612 -15.09793 -14.73288 -14.29752 -13.96227 -13.78002 -13.50498 -13.08531 -12.89604 -12.79801 -12.76922 -12.36923 -12.21526 -12.10217 -12.00961 -11.86046 -11.39125 -11.19052 -10.68520 -10.00740 -9.24596 -8.30073 -6.49050 1.26534 1.35404 1.38297 1.49780 1.97338 2.06291 2.35088 2.96977 3.77118 3.99549 4.24333 4.37730 4.42661 4.60994 4.65456 4.74723 4.87647 4.91947 4.95348 4.96451 5.06818 5.19889 5.27125 5.31394 5.46177 5.48481 5.61061 5.70730 5.93958 6.04225 6.35683 6.65708 7.14250 7.22673 8.73486 Molecular weight = 208.13amu Principal moments of inertia in cm(-1) A = 0.047594 B = 0.007846 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.171567 B = 3567.891420 C = 3798.467697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 C -0.131 4.131 4 C 0.054 3.946 5 C -0.288 4.288 6 C 0.047 3.953 7 N -0.351 5.351 8 C 0.280 3.720 9 H 0.018 0.982 10 C -0.133 4.133 11 C -0.551 4.551 12 H 0.045 0.955 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.969 3.031 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.266 1.266 19 N -0.357 5.357 20 H 0.086 0.914 21 H 0.035 0.965 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.168 0.832 28 H 0.183 0.817 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 11.399 2.306 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.035 4.035 3 C -0.189 4.189 4 C -0.111 4.111 5 C -0.318 4.318 6 C -0.102 4.102 7 N -0.131 5.131 8 C 0.180 3.820 9 H 0.036 0.964 10 C -0.192 4.192 11 C -0.589 4.589 12 H 0.063 0.937 13 C -0.174 4.174 14 N -0.546 5.546 15 Si 0.794 3.206 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.191 1.191 19 N -0.180 5.180 20 H 0.105 0.895 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.186 0.814 28 H 0.200 0.800 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.957 9.937 2.798 11.452 hybrid contribution 0.969 0.038 -0.531 1.106 sum -3.987 9.975 2.267 10.979 Atomic orbital electron populations 1.21728 0.92653 1.01274 1.03253 1.19613 0.96714 0.95925 0.91272 1.21745 1.00526 0.93205 1.03445 1.22858 0.99343 0.91252 0.97601 1.21475 1.16238 1.01411 0.92655 1.22910 1.00687 0.86575 0.99998 1.49373 1.47442 1.10388 1.05916 1.18930 0.93839 0.76790 0.92443 0.96365 1.21933 0.97722 1.04007 0.95544 1.21446 0.91015 1.02087 1.44379 0.93682 1.25639 1.03603 0.94404 0.93732 1.69951 1.37380 1.05516 1.41797 0.85340 0.78874 0.77960 0.78475 1.20116 1.20148 1.19062 1.77165 1.22682 1.18588 0.99547 0.89544 0.94610 0.91820 0.91421 0.89838 0.93744 0.91195 0.81413 0.80039 0.92814 0.89498 0.94594 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.18 71.98 0.66 -2.44 16 2 C -0.01 -0.42 3.38 -11.54 -0.04 -0.46 16 3 C -0.13 -2.86 8.78 71.98 0.63 -2.22 16 4 C 0.05 2.10 6.13 43.10 0.26 2.36 16 5 C -0.29 -10.25 9.97 21.99 0.22 -10.03 16 6 C 0.05 1.90 10.59 83.54 0.88 2.78 16 7 N -0.35 -17.15 3.51 -331.06 -1.16 -18.31 16 8 C 0.28 14.90 3.31 44.25 0.15 15.05 16 9 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 10 C -0.13 -6.22 8.61 71.99 0.62 -5.60 16 11 C -0.55 -31.19 8.84 25.60 0.23 -30.96 16 12 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 13 C 0.03 1.49 5.30 84.65 0.45 1.94 16 14 N -0.91 -50.33 11.32 21.45 0.24 -50.09 16 15 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 N -0.36 -17.26 12.58 -47.38 -0.60 -17.86 16 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.36 7.30 -2.39 -0.02 1.34 16 27 H 0.17 4.60 7.43 -2.91 -0.02 4.58 16 28 H 0.18 6.29 7.26 -2.91 -0.02 6.27 16 29 H 0.05 2.29 7.16 -2.38 -0.02 2.28 16 30 H 0.09 4.40 6.07 -2.39 -0.01 4.38 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -64.18 268.83 5.66 -58.52 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.08 Total: 12.08 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.06 Total: -29.59 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.51 Total: -86.25 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.18 5.66 -58.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.689 kcal (2) G-P(sol) polarization free energy of solvation -64.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds