Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99498 * 2 1 4 4 H 1.48499 * 109.47063 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47172 * 30.00006 * 3 2 1 6 6 H 1.48498 * 109.47187 * 150.00321 * 3 2 1 7 7 C 1.37879 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99730 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99674 * 179.97438 * 7 2 1 10 10 C 1.53780 * 113.61038 * 179.97438 * 9 7 2 11 11 C 1.53787 * 87.08006 * 89.11852 * 10 9 7 12 12 C 1.52997 * 113.61472 * 139.98129 * 11 10 9 13 13 C 1.53000 * 109.47060 * 60.00187 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 12 16 16 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 17 17 C 1.53002 * 109.46817 * 180.02562 * 12 11 10 18 18 C 1.53775 * 113.61395 * 277.49427 * 9 7 2 19 19 H 0.96993 * 120.00746 * 359.97438 * 1 2 3 20 20 H 1.08996 * 112.90475 * 48.75096 * 9 7 2 21 21 H 1.08996 * 113.61725 * 334.57219 * 10 9 7 22 22 H 1.08991 * 113.69226 * 203.67631 * 10 9 7 23 23 H 1.09006 * 113.60870 * 270.79964 * 11 10 9 24 24 H 1.09002 * 109.47153 * 299.99868 * 12 11 10 25 25 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 26 26 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 27 27 H 1.09000 * 109.47437 * 180.02562 * 14 13 12 28 28 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 29 29 H 1.09002 * 109.47067 * 300.00341 * 15 14 13 30 30 H 1.09000 * 109.47312 * 180.02562 * 15 14 13 31 31 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.47497 * 59.99850 * 16 15 14 33 33 H 1.09002 * 109.47075 * 299.99262 * 17 12 11 34 34 H 1.08996 * 109.47407 * 60.00219 * 17 12 11 35 35 H 1.09003 * 113.61256 * 156.33607 * 18 9 7 36 36 H 1.08997 * 113.61423 * 25.43672 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 6 4.1278 -2.6028 -0.0010 11 6 4.0741 -2.5408 -1.5367 12 6 5.3074 -3.1378 -2.2176 13 6 5.4444 -4.6101 -1.8247 14 6 6.6780 -5.2068 -2.5051 15 6 6.5264 -5.0963 -4.0236 16 6 6.3893 -3.6240 -4.4166 17 6 5.1554 -3.0266 -3.7360 18 6 4.1271 -1.0096 -1.3983 19 1 -0.4851 0.8399 0.0004 20 1 3.9361 -0.5319 0.7537 21 1 3.4765 -3.3641 0.4282 22 1 5.1408 -2.6378 0.3994 23 1 3.1384 -2.9106 -1.9561 24 1 6.1967 -2.5928 -1.9010 25 1 5.5528 -4.6888 -0.7429 26 1 4.5551 -5.1549 -2.1413 27 1 6.7755 -6.2558 -2.2255 28 1 7.5672 -4.6618 -2.1881 29 1 5.6372 -5.6413 -4.3406 30 1 7.4050 -5.5218 -4.5084 31 1 6.2808 -3.5452 -5.4983 32 1 7.2784 -3.0789 -4.0996 33 1 4.2661 -3.5713 -4.0530 34 1 5.0580 -1.9777 -4.0157 35 1 5.1401 -0.6077 -1.3796 36 1 3.4752 -0.4850 -2.0968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260971337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -21.329214 kcal Electronic energy + Delta-G solvation = -14067.166699 eV Core-core repulsion = 11936.092170 eV Total energy + Delta-G solvation = -2131.074529 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15556 -36.82287 -32.34522 -30.64620 -30.56170 -26.24100 -24.72454 -23.16592 -22.13040 -20.55693 -19.48509 -18.24257 -16.41585 -15.37738 -14.62613 -14.10527 -14.01047 -13.96890 -13.18540 -12.78446 -12.65074 -12.33785 -11.98274 -11.56034 -11.36655 -11.04696 -10.93079 -10.90903 -10.62641 -10.34848 -10.10363 -10.04895 -9.83236 -9.60854 -9.07051 -8.93618 -8.71316 -8.45020 -6.02886 -4.01406 3.33690 3.40810 3.45389 4.48062 4.86159 4.91820 4.96440 5.25356 5.35423 5.41026 5.61848 5.65924 5.70369 5.72021 5.80372 5.94472 6.06269 6.08709 6.13833 6.20550 6.27099 6.35530 6.37586 6.46777 6.49821 6.59761 6.66338 6.74026 6.83384 7.15237 7.20808 7.28672 7.64777 7.89991 8.60505 9.01731 9.61006 11.09976 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.054883 B = 0.007611 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.053361 B = 3677.877359 C = 3813.425779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.130 4.130 11 C -0.089 4.089 12 C -0.076 4.076 13 C -0.112 4.112 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.151 4.151 19 H 0.263 0.737 20 H 0.031 0.969 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -7.098 -6.434 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.532 4.532 8 H 0.091 0.909 9 C -0.019 4.019 10 C -0.167 4.167 11 C -0.107 4.107 12 C -0.095 4.095 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.189 4.189 19 H 0.072 0.928 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.649 -6.978 -6.430 15.813 hybrid contribution 0.342 0.954 -0.092 1.018 sum 12.991 -6.024 -6.522 15.735 Atomic orbital electron populations 1.69907 1.06301 1.26882 1.51147 1.24978 0.94609 0.99092 0.94376 0.86811 0.80470 0.83603 0.78565 1.20293 1.21697 1.18773 1.20794 0.88132 0.94291 1.50030 0.90917 1.20312 0.96154 0.93040 0.92431 1.22892 0.98645 0.99913 0.95265 1.22332 0.96637 0.96232 0.95538 1.21197 0.98561 0.95247 0.94473 1.21542 0.97342 0.96049 1.00022 1.21548 0.98722 1.00116 0.95263 1.21524 1.01084 0.96773 0.96180 1.21552 0.98798 0.95817 0.99473 1.21561 0.97326 1.00690 0.95465 1.23320 0.98522 0.95178 1.01836 0.92754 0.95089 0.92597 0.92608 0.89607 0.92017 0.91950 0.92220 0.92627 0.92414 0.92200 0.92775 0.92625 0.92409 0.92174 0.92057 0.93137 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.04 26.99 -169.99 -4.59 17.45 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.37 6.26 56.52 0.35 -6.01 16 7 C -0.49 -14.06 9.01 -34.44 -0.31 -14.37 16 8 H 0.07 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.00 -0.01 2.93 -90.96 -0.27 -0.28 16 10 C -0.13 -2.62 6.26 -25.92 -0.16 -2.78 16 11 C -0.09 -1.69 2.85 -89.78 -0.26 -1.95 16 12 C -0.08 -1.17 1.94 -90.62 -0.18 -1.34 16 13 C -0.11 -1.53 5.01 -26.73 -0.13 -1.67 16 14 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 15 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 16 C -0.12 -1.39 5.92 -26.71 -0.16 -1.55 16 17 C -0.11 -1.58 5.20 -26.70 -0.14 -1.72 16 18 C -0.15 -3.21 6.49 -25.89 -0.17 -3.37 16 19 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 20 H 0.03 0.76 6.59 -51.93 -0.34 0.42 16 21 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 22 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 23 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 24 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 25 H 0.06 0.87 7.45 -51.93 -0.39 0.48 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.98 7.96 -51.93 -0.41 0.57 16 36 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -29.30 276.12 -8.47 -37.77 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.64 Total: -2.16 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -2.18 Total: -30.05 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.59 Total: 17.45 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.30 -8.47 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260971337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.440 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds