Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99498 * 2 1 4 4 H 1.48499 * 109.47063 * 270.00111 * 3 2 1 5 5 H 1.48498 * 109.47172 * 30.00006 * 3 2 1 6 6 H 1.48498 * 109.47187 * 150.00321 * 3 2 1 7 7 C 1.37879 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99730 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99674 * 179.97438 * 7 2 1 10 10 C 1.53780 * 113.61038 * 179.97438 * 9 7 2 11 11 C 1.53787 * 87.08006 * 89.11852 * 10 9 7 12 12 C 1.52997 * 113.61472 * 139.98129 * 11 10 9 13 13 C 1.53000 * 109.47060 * 60.00187 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 12 16 16 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 17 17 C 1.53002 * 109.46817 * 180.02562 * 12 11 10 18 18 C 1.53775 * 113.61395 * 277.49427 * 9 7 2 19 19 H 0.96993 * 120.00746 * 359.97438 * 1 2 3 20 20 H 1.08996 * 112.90475 * 48.75096 * 9 7 2 21 21 H 1.08996 * 113.61725 * 334.57219 * 10 9 7 22 22 H 1.08991 * 113.69226 * 203.67631 * 10 9 7 23 23 H 1.09006 * 113.60870 * 270.79964 * 11 10 9 24 24 H 1.09002 * 109.47153 * 299.99868 * 12 11 10 25 25 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 26 26 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 27 27 H 1.09000 * 109.47437 * 180.02562 * 14 13 12 28 28 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 29 29 H 1.09002 * 109.47067 * 300.00341 * 15 14 13 30 30 H 1.09000 * 109.47312 * 180.02562 * 15 14 13 31 31 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.47497 * 59.99850 * 16 15 14 33 33 H 1.09002 * 109.47075 * 299.99262 * 17 12 11 34 34 H 1.08996 * 109.47407 * 60.00219 * 17 12 11 35 35 H 1.09003 * 113.61256 * 156.33607 * 18 9 7 36 36 H 1.08997 * 113.61423 * 25.43672 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 6 4.1278 -2.6028 -0.0010 11 6 4.0741 -2.5408 -1.5367 12 6 5.3074 -3.1378 -2.2176 13 6 5.4444 -4.6101 -1.8247 14 6 6.6780 -5.2068 -2.5051 15 6 6.5264 -5.0963 -4.0236 16 6 6.3893 -3.6240 -4.4166 17 6 5.1554 -3.0266 -3.7360 18 6 4.1271 -1.0096 -1.3983 19 1 -0.4851 0.8399 0.0004 20 1 3.9361 -0.5319 0.7537 21 1 3.4765 -3.3641 0.4282 22 1 5.1408 -2.6378 0.3994 23 1 3.1384 -2.9106 -1.9561 24 1 6.1967 -2.5928 -1.9010 25 1 5.5528 -4.6888 -0.7429 26 1 4.5551 -5.1549 -2.1413 27 1 6.7755 -6.2558 -2.2255 28 1 7.5672 -4.6618 -2.1881 29 1 5.6372 -5.6413 -4.3406 30 1 7.4050 -5.5218 -4.5084 31 1 6.2808 -3.5452 -5.4983 32 1 7.2784 -3.0789 -4.0996 33 1 4.2661 -3.5713 -4.0530 34 1 5.0580 -1.9777 -4.0157 35 1 5.1401 -0.6077 -1.3796 36 1 3.4752 -0.4850 -2.0968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260971337.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -36.555880 kcal Electronic energy + Delta-G solvation = -14067.826977 eV Core-core repulsion = 11936.092170 eV Total energy + Delta-G solvation = -2131.734807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.56511 -38.17034 -34.48586 -31.95059 -31.56626 -28.17574 -26.37647 -24.70774 -23.17002 -21.93430 -20.60388 -20.07566 -18.46896 -16.55309 -16.52610 -15.60591 -15.26406 -14.99502 -14.76508 -14.60503 -13.96550 -13.72340 -13.32242 -12.96003 -12.90169 -12.75840 -12.47600 -12.08815 -11.91917 -11.76844 -11.66436 -11.45420 -11.22232 -11.18026 -10.83999 -10.76087 -10.49315 -10.26181 -8.29031 -6.32393 1.34627 1.35887 1.47764 2.36252 3.04520 3.79121 3.80521 3.95617 4.14856 4.21073 4.30321 4.45883 4.53467 4.58398 4.63714 4.73219 4.77028 4.83252 4.87196 4.97119 5.03241 5.13319 5.23061 5.26972 5.28283 5.34077 5.40028 5.41338 5.47198 5.50653 5.61167 5.69532 5.88352 5.89289 6.35531 6.75363 7.33393 8.87601 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.054883 B = 0.007611 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.053361 B = 3677.877359 C = 3813.425779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.500 4.500 8 H 0.028 0.972 9 C -0.020 4.020 10 C -0.119 4.119 11 C -0.079 4.079 12 C -0.068 4.068 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.142 4.142 19 H 0.265 0.735 20 H 0.031 0.969 21 H 0.041 0.959 22 H 0.087 0.913 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.029 -6.959 -7.088 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.538 4.538 8 H 0.046 0.954 9 C -0.039 4.039 10 C -0.156 4.156 11 C -0.098 4.098 12 C -0.087 4.087 13 C -0.150 4.150 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.180 4.180 19 H 0.074 0.926 20 H 0.049 0.951 21 H 0.060 0.940 22 H 0.106 0.894 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.877 -6.859 -7.086 18.691 hybrid contribution -0.743 0.830 0.137 1.123 sum 15.134 -6.029 -6.948 17.711 Atomic orbital electron populations 1.70059 1.08270 1.28020 1.53062 1.25893 0.95411 1.03228 0.94130 0.85753 0.79747 0.78503 0.79213 1.19250 1.21369 1.16657 1.21042 0.90819 0.92633 1.49306 0.95368 1.20323 0.93341 0.95884 0.94303 1.22845 0.99586 0.96976 0.96212 1.22171 0.97450 0.95044 0.95129 1.21112 0.96483 0.96153 0.94904 1.21528 0.98344 0.94900 1.00183 1.21522 0.97507 1.00810 0.95365 1.21539 1.01862 0.96220 0.95908 1.21523 0.97526 0.96233 0.99893 1.21556 0.98436 1.00367 0.94831 1.23237 0.99270 0.96592 0.98938 0.92600 0.95057 0.94042 0.89415 0.92552 0.90962 0.92166 0.93256 0.91349 0.91584 0.92607 0.90779 0.91539 0.91609 0.93218 0.92858 0.90088 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.94 45.43 26.99 68.60 1.85 47.28 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.24 -10.83 6.26 99.48 0.62 -10.21 16 7 C -0.50 -29.40 9.01 25.60 0.23 -29.17 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C -0.02 -0.93 2.93 -11.01 -0.03 -0.97 16 10 C -0.12 -4.69 6.26 31.12 0.19 -4.49 16 11 C -0.08 -2.98 2.85 -10.25 -0.03 -3.01 16 12 C -0.07 -1.93 1.94 -10.79 -0.02 -1.95 16 13 C -0.11 -2.83 5.01 30.59 0.15 -2.67 16 14 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 15 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 16 C -0.11 -2.32 5.92 30.61 0.18 -2.13 16 17 C -0.11 -3.01 5.20 30.61 0.16 -2.85 16 18 C -0.14 -5.86 6.49 31.14 0.20 -5.66 16 19 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 20 H 0.03 1.48 6.59 -2.39 -0.02 1.47 16 21 H 0.04 1.73 8.09 -2.39 -0.02 1.71 16 22 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 23 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 24 H 0.07 1.95 7.94 -2.39 -0.02 1.93 16 25 H 0.06 1.54 7.45 -2.39 -0.02 1.52 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 2.86 7.96 -2.39 -0.02 2.84 16 36 H 0.04 1.61 7.86 -2.39 -0.02 1.59 16 Total: -1.00 -64.75 276.12 4.93 -59.81 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.92 Total: 9.57 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 1.86 Total: -55.92 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.85 Total: 47.28 kcal Total: -64.75 4.93 -59.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260971337.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.258 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds