Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46721 * 299.99655 * 3 2 1 6 6 H 1.48501 * 109.47161 * 59.99464 * 3 2 1 7 7 C 1.37882 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00273 * 0.02562 * 7 2 1 10 10 H 1.09008 * 115.54779 * 325.66409 * 9 7 2 11 11 C 1.53069 * 117.53537 * 111.37887 * 9 7 2 12 12 C 1.53000 * 117.50104 * 179.97438 * 9 7 2 13 13 H 1.09002 * 117.49833 * 359.97323 * 12 9 7 14 14 C 1.52996 * 117.50107 * 144.97269 * 12 9 7 15 15 C 1.52997 * 109.47365 * 184.91292 * 14 12 9 16 16 C 1.53001 * 109.47035 * 294.99907 * 15 14 12 17 17 C 1.52997 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47303 * 59.99872 * 17 16 15 19 19 C 1.53001 * 109.47180 * 300.00039 * 18 17 16 20 20 C 1.52991 * 109.47219 * 60.00019 * 19 18 17 21 21 H 0.97002 * 120.00304 * 0.02562 * 1 2 3 22 22 H 1.09000 * 117.51640 * 359.97438 * 11 9 7 23 23 H 1.08999 * 117.49573 * 214.95399 * 11 9 7 24 24 H 1.09002 * 109.47136 * 304.91382 * 14 12 9 25 25 H 1.09004 * 109.47386 * 64.91055 * 14 12 9 26 26 H 1.09006 * 109.47202 * 54.99633 * 15 14 12 27 27 H 1.08997 * 109.47123 * 299.99847 * 16 15 14 28 28 H 1.09004 * 109.47185 * 59.99780 * 16 15 14 29 29 H 1.09006 * 109.47202 * 299.99727 * 17 16 15 30 30 H 1.09003 * 109.47120 * 179.97438 * 17 16 15 31 31 H 1.09009 * 109.47132 * 180.02562 * 18 17 16 32 32 H 1.08997 * 109.47559 * 60.00178 * 18 17 16 33 33 H 1.09006 * 109.46902 * 299.99887 * 19 18 17 34 34 H 1.08999 * 109.46683 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47304 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47130 * 59.99935 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.3124 -2.5001 0.5549 11 6 1.3262 -3.3597 -1.2632 12 6 2.0731 -3.7896 0.0005 13 1 3.1589 -3.6945 0.0001 14 6 1.5154 -4.9825 0.7795 15 6 2.5326 -6.1252 0.7594 16 6 2.7091 -6.6257 -0.6756 17 6 3.7267 -7.7680 -0.6958 18 6 3.2252 -8.9135 0.1857 19 6 3.0486 -8.4130 1.6207 20 6 2.0310 -7.2708 1.6410 21 1 -0.4851 0.8400 -0.0004 22 1 1.9204 -2.9817 -2.0951 23 1 0.4371 -3.9264 -1.5397 24 1 1.3230 -4.6854 1.8104 25 1 0.5858 -5.3154 0.3178 26 1 3.4893 -5.7668 1.1395 27 1 1.7525 -6.9841 -1.0557 28 1 3.0669 -5.8097 -1.3036 29 1 4.6833 -7.4092 -0.3159 30 1 3.8522 -8.1248 -1.7181 31 1 3.9504 -9.7271 0.1717 32 1 2.2686 -9.2723 -0.1941 33 1 4.0052 -8.0542 2.0007 34 1 2.6917 -9.2292 2.2488 35 1 1.9056 -6.9139 2.6632 36 1 1.0745 -7.6296 1.2610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260979085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -24.871152 kcal Electronic energy + Delta-G solvation = -13624.323635 eV Core-core repulsion = 11493.095516 eV Total energy + Delta-G solvation = -2131.228119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.66786 -36.17427 -32.57501 -31.40945 -30.56014 -26.46394 -25.04165 -22.44437 -21.34828 -20.24420 -19.49951 -19.03897 -16.44023 -15.25293 -14.53443 -14.26385 -14.04018 -13.89087 -13.48398 -12.96408 -12.33788 -12.03023 -11.83260 -11.60200 -11.24662 -10.99995 -10.95130 -10.83351 -10.70668 -10.40618 -10.23862 -10.15571 -9.93302 -9.72391 -9.27332 -8.95805 -8.33892 -8.08523 -6.04624 -4.02907 3.29106 3.36939 3.41497 4.41600 4.82493 4.89350 4.93188 5.08477 5.34000 5.37706 5.54754 5.64442 5.66282 5.68213 5.69892 5.78134 6.05889 6.10947 6.16127 6.27092 6.28956 6.31341 6.35464 6.45043 6.57653 6.66658 6.74706 6.82304 6.91281 7.01096 7.03914 7.47310 7.71060 7.93998 8.49821 8.98809 9.56464 11.06271 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.064283 B = 0.005815 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.470985 B = 4814.200623 C = 4866.355409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.493 4.493 8 H 0.058 0.942 9 C 0.033 3.967 10 H 0.074 0.926 11 C -0.208 4.208 12 C -0.185 4.185 13 H 0.082 0.918 14 C -0.076 4.076 15 C -0.082 4.082 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.115 4.115 21 H 0.261 0.739 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -14.385 1.189 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.014 3.986 10 H 0.092 0.908 11 C -0.246 4.246 12 C -0.203 4.203 13 H 0.100 0.900 14 C -0.113 4.113 15 C -0.100 4.100 16 C -0.148 4.148 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.552 -14.255 1.193 15.012 hybrid contribution 0.406 0.872 -0.147 0.973 sum 4.959 -13.383 1.046 14.310 Atomic orbital electron populations 1.69978 1.06099 1.26634 1.49860 1.25036 0.94856 0.99272 0.94590 0.86503 0.80164 0.83505 0.77659 1.19640 1.20905 1.20861 1.20753 0.92590 0.89616 1.50067 0.92423 1.19969 0.96330 0.88091 0.94188 0.90813 1.23060 1.00744 1.07812 0.92987 1.22279 0.97419 0.98375 1.02235 0.90005 1.21131 0.97080 0.93448 0.99643 1.21157 0.99330 0.94615 0.94924 1.21546 0.98681 0.97452 0.97108 1.21562 0.99156 0.96030 0.99028 1.21530 1.00810 0.97599 0.95640 1.21528 0.99647 0.97968 0.96457 1.21610 0.98403 0.95486 0.99801 0.92923 0.91074 0.92027 0.92622 0.92949 0.91647 0.92501 0.91301 0.92301 0.92567 0.92715 0.92281 0.92237 0.92618 0.92248 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.13 55.43 0.73 -25.74 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.49 -14.08 9.21 -34.44 -0.32 -14.40 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.03 0.86 5.30 -91.74 -0.49 0.37 16 10 H 0.07 2.08 7.90 -51.92 -0.41 1.67 16 11 C -0.21 -4.82 9.88 -26.72 -0.26 -5.09 16 12 C -0.18 -3.97 4.42 -90.64 -0.40 -4.37 16 13 H 0.08 1.79 8.08 -51.93 -0.42 1.37 16 14 C -0.08 -1.35 4.96 -26.73 -0.13 -1.49 16 15 C -0.08 -1.21 2.15 -90.62 -0.19 -1.40 16 16 C -0.11 -1.55 5.02 -26.73 -0.13 -1.68 16 17 C -0.12 -1.42 5.92 -26.74 -0.16 -1.57 16 18 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 19 C -0.12 -1.30 5.92 -26.74 -0.16 -1.45 16 20 C -0.12 -1.46 5.21 -26.73 -0.14 -1.60 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 23 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.07 7.38 -51.93 -0.38 0.69 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -28.78 286.45 -9.27 -38.06 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.66 Total: -0.83 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: -2.64 Total: -32.34 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.73 Total: -25.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.78 -9.27 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.184 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds