Wall clock time and date at job start Mon Mar 30 2020 02:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46721 * 299.99655 * 3 2 1 6 6 H 1.48501 * 109.47161 * 59.99464 * 3 2 1 7 7 C 1.37882 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99730 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00273 * 0.02562 * 7 2 1 10 10 H 1.09008 * 115.54779 * 325.66409 * 9 7 2 11 11 C 1.53069 * 117.53537 * 111.37887 * 9 7 2 12 12 C 1.53000 * 117.50104 * 179.97438 * 9 7 2 13 13 H 1.09002 * 117.49833 * 359.97323 * 12 9 7 14 14 C 1.52996 * 117.50107 * 144.97269 * 12 9 7 15 15 C 1.52997 * 109.47365 * 184.91292 * 14 12 9 16 16 C 1.53001 * 109.47035 * 294.99907 * 15 14 12 17 17 C 1.52997 * 109.47035 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47303 * 59.99872 * 17 16 15 19 19 C 1.53001 * 109.47180 * 300.00039 * 18 17 16 20 20 C 1.52991 * 109.47219 * 60.00019 * 19 18 17 21 21 H 0.97002 * 120.00304 * 0.02562 * 1 2 3 22 22 H 1.09000 * 117.51640 * 359.97438 * 11 9 7 23 23 H 1.08999 * 117.49573 * 214.95399 * 11 9 7 24 24 H 1.09002 * 109.47136 * 304.91382 * 14 12 9 25 25 H 1.09004 * 109.47386 * 64.91055 * 14 12 9 26 26 H 1.09006 * 109.47202 * 54.99633 * 15 14 12 27 27 H 1.08997 * 109.47123 * 299.99847 * 16 15 14 28 28 H 1.09004 * 109.47185 * 59.99780 * 16 15 14 29 29 H 1.09006 * 109.47202 * 299.99727 * 17 16 15 30 30 H 1.09003 * 109.47120 * 179.97438 * 17 16 15 31 31 H 1.09009 * 109.47132 * 180.02562 * 18 17 16 32 32 H 1.08997 * 109.47559 * 60.00178 * 18 17 16 33 33 H 1.09006 * 109.46902 * 299.99887 * 19 18 17 34 34 H 1.08999 * 109.46683 * 180.02562 * 19 18 17 35 35 H 1.09003 * 109.47304 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.47130 * 59.99935 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.3124 -2.5001 0.5549 11 6 1.3262 -3.3597 -1.2632 12 6 2.0731 -3.7896 0.0005 13 1 3.1589 -3.6945 0.0001 14 6 1.5154 -4.9825 0.7795 15 6 2.5326 -6.1252 0.7594 16 6 2.7091 -6.6257 -0.6756 17 6 3.7267 -7.7680 -0.6958 18 6 3.2252 -8.9135 0.1857 19 6 3.0486 -8.4130 1.6207 20 6 2.0310 -7.2708 1.6410 21 1 -0.4851 0.8400 -0.0004 22 1 1.9204 -2.9817 -2.0951 23 1 0.4371 -3.9264 -1.5397 24 1 1.3230 -4.6854 1.8104 25 1 0.5858 -5.3154 0.3178 26 1 3.4893 -5.7668 1.1395 27 1 1.7525 -6.9841 -1.0557 28 1 3.0669 -5.8097 -1.3036 29 1 4.6833 -7.4092 -0.3159 30 1 3.8522 -8.1248 -1.7181 31 1 3.9504 -9.7271 0.1717 32 1 2.2686 -9.2723 -0.1941 33 1 4.0052 -8.0542 2.0007 34 1 2.6917 -9.2292 2.2488 35 1 1.9056 -6.9139 2.6632 36 1 1.0745 -7.6296 1.2610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260979085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:50 Heat of formation + Delta-G solvation = -38.300261 kcal Electronic energy + Delta-G solvation = -13624.905965 eV Core-core repulsion = 11493.095516 eV Total energy + Delta-G solvation = -2131.810449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 208.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.85731 -37.88594 -34.50925 -32.84962 -31.53994 -28.14069 -26.85190 -23.45674 -22.65312 -22.09660 -20.85444 -20.45025 -18.57027 -16.67017 -16.21820 -15.51115 -15.35455 -15.06712 -14.77722 -14.59502 -13.87193 -13.35686 -13.03531 -13.00254 -12.88643 -12.75675 -12.65019 -12.27034 -11.97230 -11.89248 -11.70488 -11.50621 -11.25996 -11.08803 -10.89760 -10.78749 -10.28960 -10.02822 -8.21245 -6.26831 1.39196 1.39640 1.53099 2.39053 2.99084 3.56980 3.77591 3.90723 3.96372 4.21741 4.36743 4.48693 4.50533 4.59530 4.67531 4.72324 4.81041 4.82369 4.88098 4.90523 5.01538 5.09203 5.17805 5.22164 5.24336 5.32612 5.38086 5.44690 5.48568 5.52415 5.59763 5.66547 5.70124 5.80058 6.34935 6.80339 7.35774 8.90732 Molecular weight = 208.15amu Principal moments of inertia in cm(-1) A = 0.064283 B = 0.005815 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.470985 B = 4814.200623 C = 4866.355409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C -0.011 4.011 10 H 0.044 0.956 11 C -0.198 4.198 12 C -0.149 4.149 13 H 0.080 0.920 14 C -0.072 4.072 15 C -0.076 4.076 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.113 4.113 21 H 0.264 0.736 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -15.630 1.287 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.029 4.029 10 H 0.063 0.937 11 C -0.236 4.236 12 C -0.167 4.167 13 H 0.099 0.901 14 C -0.110 4.110 15 C -0.095 4.095 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.151 4.151 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.701 -15.515 1.291 16.580 hybrid contribution 0.025 1.225 -0.182 1.239 sum 5.726 -14.290 1.109 15.435 Atomic orbital electron populations 1.70098 1.07710 1.27728 1.50972 1.25915 0.95751 1.03032 0.94130 0.85394 0.78955 0.78709 0.77949 1.18847 1.20231 1.20069 1.21071 0.92647 0.91104 1.50374 0.92726 1.19876 0.96467 0.89738 0.96834 0.93737 1.23002 1.01430 1.06684 0.92501 1.22271 0.96828 0.97007 1.00635 0.90149 1.21129 0.98045 0.93191 0.98608 1.21090 0.97973 0.94245 0.96182 1.21520 0.99416 0.97812 0.95995 1.21540 0.98309 0.95557 1.00097 1.21533 1.01424 0.97475 0.94960 1.21521 0.99072 0.97649 0.97111 1.21578 0.99061 0.95239 0.99186 0.92672 0.91549 0.90797 0.93011 0.92790 0.92096 0.92544 0.93233 0.92297 0.91586 0.90954 0.92036 0.92147 0.90947 0.92159 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.13 21.45 0.28 -56.14 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.51 -30.00 9.21 25.60 0.24 -29.76 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 9 C -0.01 -0.58 5.30 -11.52 -0.06 -0.64 16 10 H 0.04 2.63 7.90 -2.38 -0.02 2.62 16 11 C -0.20 -9.27 9.88 30.60 0.30 -8.97 16 12 C -0.15 -6.44 4.42 -10.81 -0.05 -6.49 16 13 H 0.08 3.50 8.08 -2.39 -0.02 3.48 16 14 C -0.07 -2.55 4.96 30.59 0.15 -2.40 16 15 C -0.08 -2.15 2.15 -10.79 -0.02 -2.18 16 16 C -0.11 -2.92 5.02 30.59 0.15 -2.76 16 17 C -0.12 -2.48 5.92 30.59 0.18 -2.30 16 18 C -0.12 -2.11 5.92 30.59 0.18 -1.92 16 19 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 20 C -0.11 -2.62 5.21 30.59 0.16 -2.46 16 21 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 22 H 0.07 3.13 8.14 -2.39 -0.02 3.12 16 23 H 0.07 3.23 8.03 -2.39 -0.02 3.21 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 1.89 7.88 -2.38 -0.02 1.87 16 26 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.49 7.38 -2.39 -0.02 1.47 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -62.04 286.45 5.19 -56.86 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.00 Total: 13.47 kcal Atomic # 6 Polarization: -62.69 SS G_CDS: 1.88 Total: -60.82 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -62.04 5.19 -56.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.555 kcal (2) G-P(sol) polarization free energy of solvation -62.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds